Variant report

Variant	rs17161772
Chromosome Location	chr7:99204540-99204541
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99204425..99206028-chr7:99207870..99210092,2	K562	blood:
2	chr7:99204437..99206018-chr7:99210579..99212481,2	MCF-7	breast:
3	chr7:99199174..99201027-chr7:99204076..99205665,2	K562	blood:
4	chr7:99199487..99203566-chr7:99204354..99207770,4	K562	blood:

Variant related genes	Relation type
ENSG00000244219	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1004387	1.00[CEU][hapmap]
rs10211	0.82[JPT][hapmap]
rs10225314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10238965	0.89[JPT][hapmap]
rs10240199	0.90[ASN][1000 genomes]
rs10242455	0.83[JPT][hapmap]
rs10254729	0.89[JPT][hapmap]
rs10265385	0.85[ASN][1000 genomes]
rs10271049	0.84[JPT][hapmap]
rs10282706	0.82[JPT][hapmap]
rs1043466	0.84[JPT][hapmap]
rs10464604	0.84[EUR][1000 genomes]
rs11539770	0.84[EUR][1000 genomes]
rs11772470	0.89[JPT][hapmap]
rs11976018	0.84[JPT][hapmap]
rs12360	0.82[JPT][hapmap]
rs13240600	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1357319	0.82[JPT][hapmap]
rs1419745	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap]
rs15524	0.83[JPT][hapmap]
rs17161698	0.84[EUR][1000 genomes]
rs17161768	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17161769	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17161771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17161774	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161780	1.00[CEU][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161783	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1851427	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1859690	0.83[JPT][hapmap]
rs1879859	0.82[JPT][hapmap]
rs1980307	0.84[JPT][hapmap]
rs1985453	0.82[ASW][hapmap];0.84[EUR][1000 genomes]
rs2037498	0.82[JPT][hapmap]
rs2037499	0.82[JPT][hapmap]
rs2057906	0.84[EUR][1000 genomes]
rs2222411	0.82[JPT][hapmap]
rs2240384	0.84[JPT][hapmap]
rs2240385	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.84[EUR][1000 genomes]
rs2257401	0.82[JPT][hapmap]
rs2269985	0.84[EUR][1000 genomes]
rs2272168	0.84[JPT][hapmap]
rs2280600	0.84[JPT][hapmap]
rs2404322	0.84[EUR][1000 genomes]
rs2404770	0.82[JPT][hapmap]
rs2687076	0.82[JPT][hapmap]
rs2687079	0.82[JPT][hapmap]
rs2687081	0.82[JPT][hapmap]
rs2687086	0.88[JPT][hapmap]
rs2687087	0.82[JPT][hapmap]
rs2687133	0.82[JPT][hapmap]
rs2687134	0.81[JPT][hapmap]
rs2687136	0.82[JPT][hapmap]
rs2687139	0.82[JPT][hapmap]
rs2687140	0.81[JPT][hapmap]
rs2687142	0.81[JPT][hapmap]
rs2687144	0.82[JPT][hapmap]
rs2687145	0.82[JPT][hapmap]
rs2740565	0.82[JPT][hapmap]
rs3735453	0.82[JPT][hapmap]
rs3764815	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[MEX][hapmap];0.84[EUR][1000 genomes]
rs3779354	0.80[CHB][hapmap];0.86[GIH][hapmap];0.84[JPT][hapmap]
rs3800960	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3823812	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3843540	0.84[JPT][hapmap]
rs41301658	0.82[AFR][1000 genomes]
rs45442295	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45454395	0.82[AFR][1000 genomes]
rs45460091	0.91[AFR][1000 genomes]
rs45492098	0.84[EUR][1000 genomes]
rs45540134	0.84[EUR][1000 genomes]
rs45600842	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45622743	0.84[EUR][1000 genomes]
rs4646440	0.91[AFR][1000 genomes]
rs4646446	1.00[ASW][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646447	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646449	1.00[ASW][hapmap];0.84[CHB][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646453	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646456	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646457	0.83[JPT][hapmap]
rs4646458	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs4646462	0.93[AFR][1000 genomes]
rs58024720	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58222677	0.84[EUR][1000 genomes]
rs59986060	0.84[EUR][1000 genomes]
rs60298785	0.91[AFR][1000 genomes]
rs60301933	0.81[ASN][1000 genomes]
rs60865030	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61159815	0.84[EUR][1000 genomes]
rs61337492	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61402640	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61543997	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6465750	0.82[JPT][hapmap]
rs6961634	0.89[JPT][hapmap]
rs6962772	0.84[JPT][hapmap]
rs72494451	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72494452	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72494453	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72494454	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72494458	0.89[AFR][1000 genomes]
rs776741	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs776746	0.82[JPT][hapmap]
rs7794705	0.84[JPT][hapmap]
rs7808022	0.83[JPT][hapmap]
rs8175345	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs868564	0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs917154	0.84[JPT][hapmap]
rs940336	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17161772	BUD31	cis	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99197200-99213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:99198400-99213800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:99199800-99214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:99202400-99209400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:99203600-99205400	Enhancers	HepG2	liver
6	chr7:99204200-99204800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:99204200-99213600	Weak transcription	Brain Cingulate Gyrus	brain

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