Variant report

Variant	rs45460091
Chromosome Location	chr7:99305350-99305351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17161771	0.89[AFR][1000 genomes]
rs17161772	0.91[AFR][1000 genomes]
rs17161774	0.93[AFR][1000 genomes]
rs17161783	0.93[AFR][1000 genomes]
rs1851427	0.95[AFR][1000 genomes]
rs3823812	0.81[AFR][1000 genomes]
rs41301658	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4646440	0.95[AFR][1000 genomes]
rs4646446	0.91[AFR][1000 genomes]
rs4646447	0.91[AFR][1000 genomes]
rs4646449	0.91[AFR][1000 genomes]
rs4646453	0.81[AFR][1000 genomes]
rs4646456	0.85[AFR][1000 genomes]
rs4646462	0.98[AFR][1000 genomes]
rs60298785	0.95[AFR][1000 genomes]
rs60865030	0.95[AFR][1000 genomes]
rs61337492	0.93[AFR][1000 genomes]
rs72494454	0.95[AFR][1000 genomes]
rs72494458	0.93[AFR][1000 genomes]
rs8175345	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3378448	chr7:99295540-99331065	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv522107	chr7:99300758-99314986	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99291400-99306600	Weak transcription	Left Ventricle	heart
2	chr7:99297800-99316200	Weak transcription	Gastric	stomach
3	chr7:99297800-99317400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:99298000-99311600	Weak transcription	Pancreas	Pancrea
5	chr7:99301400-99315400	Strong transcription	Liver	Liver
6	chr7:99303200-99318200	Weak transcription	Fetal Heart	heart
7	chr7:99303200-99337200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:99304200-99306800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr7:99304800-99305800	Weak transcription	Ovary	ovary
10	chr7:99304800-99318000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:99305000-99311400	Weak transcription	Aorta	Aorta
12	chr7:99305200-99305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:99305200-99306200	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr7:99305200-99306600	Weak transcription	Primary T cells from cord blood	blood
15	chr7:99305200-99311400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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