Variant report

Variant	rs41301658
Chromosome Location	chr7:99271853-99271854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99269970..99274089-chr7:99274560..99278506,7	MCF-7	breast:
2	chr7:99212976..99215779-chr7:99269486..99271923,2	K562	blood:
3	chr7:99270833..99272685-chr7:99275092..99276816,2	K562	blood:

Variant related genes	Relation type
ENSG00000106258	Chromatin interaction
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17161771	0.80[AFR][1000 genomes]
rs17161772	0.82[AFR][1000 genomes]
rs17161774	0.84[AFR][1000 genomes]
rs17161783	0.84[AFR][1000 genomes]
rs1851427	0.86[AFR][1000 genomes]
rs3823812	0.81[AFR][1000 genomes]
rs45460091	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4646440	0.91[AFR][1000 genomes]
rs4646446	0.91[AFR][1000 genomes]
rs4646447	0.91[AFR][1000 genomes]
rs4646449	0.91[AFR][1000 genomes]
rs4646453	0.81[AFR][1000 genomes]
rs4646462	0.88[AFR][1000 genomes]
rs60298785	0.86[AFR][1000 genomes]
rs60865030	0.86[AFR][1000 genomes]
rs61337492	0.84[AFR][1000 genomes]
rs72494454	0.86[AFR][1000 genomes]
rs72494458	0.84[AFR][1000 genomes]
rs8175345	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99229200-99275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:99229800-99272600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:99230400-99272000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr7:99232000-99275000	Weak transcription	A549	lung
5	chr7:99235800-99276400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:99237000-99272200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:99242400-99272400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:99243000-99278800	Weak transcription	Brain Angular Gyrus	brain
9	chr7:99243600-99276800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:99251600-99276400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:99254400-99275400	Weak transcription	Fetal Stomach	stomach
12	chr7:99255800-99277000	Weak transcription	Fetal Brain Male	brain
13	chr7:99257200-99274600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr7:99257400-99274600	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr7:99258400-99276400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:99258600-99274400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:99258600-99274800	Weak transcription	Lung	lung
18	chr7:99258600-99276600	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:99260200-99277000	Weak transcription	Spleen	Spleen
20	chr7:99260600-99276600	Weak transcription	Adipose Nuclei	Adipose
21	chr7:99260600-99276800	Weak transcription	Left Ventricle	heart
22	chr7:99261200-99273600	Weak transcription	Gastric	stomach
23	chr7:99261200-99274400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:99261400-99272200	Weak transcription	Primary T cells from cord blood	blood
25	chr7:99261400-99277000	Weak transcription	Small Intestine	intestine
26	chr7:99262200-99272000	Strong transcription	Liver	Liver
27	chr7:99263400-99273000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:99263600-99277400	Weak transcription	Aorta	Aorta
29	chr7:99264400-99273400	Weak transcription	Stomach Mucosa	stomach
30	chr7:99264600-99273400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:99267800-99272600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:99268000-99272400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:99269000-99273000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:99269000-99276600	Weak transcription	HMEC	breast
35	chr7:99269200-99274200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:99269600-99273400	Weak transcription	HepG2	liver
37	chr7:99270000-99272200	Strong transcription	Pancreas	Pancrea
38	chr7:99270200-99272000	Strong transcription	Fetal Lung	lung
39	chr7:99270200-99272200	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr7:99270200-99272400	Genic enhancers	Duodenum Mucosa	Duodenum
41	chr7:99270600-99272600	Weak transcription	K562	blood
42	chr7:99270600-99275000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:99270800-99272200	Strong transcription	Fetal Intestine Small	intestine
44	chr7:99271000-99275000	Weak transcription	Esophagus	oesophagus
45	chr7:99271400-99274400	Weak transcription	Colonic Mucosa	Colon
46	chr7:99271600-99272600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr7:99271600-99272800	Strong transcription	Fetal Intestine Large	intestine

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