Variant report

Variant	rs17161771
Chromosome Location	chr7:99198515-99198516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99196211..99197734-chr7:99197881..99200752,2	K562	blood:
2	chr7:99159531..99161508-chr7:99197527..99199299,2	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1004387	1.00[CEU][hapmap]
rs1011024	0.81[ASN][1000 genomes]
rs10211	0.82[JPT][hapmap]
rs10225314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10238965	0.89[JPT][hapmap]
rs10240199	0.91[ASN][1000 genomes]
rs10242455	0.83[JPT][hapmap]
rs10254729	0.89[JPT][hapmap]
rs10265385	0.87[ASN][1000 genomes]
rs10271049	0.84[JPT][hapmap]
rs10282706	0.82[JPT][hapmap]
rs1043466	0.84[JPT][hapmap]
rs10464604	0.84[EUR][1000 genomes]
rs11539770	0.84[EUR][1000 genomes]
rs11772470	0.89[JPT][hapmap]
rs11976018	0.84[JPT][hapmap]
rs12360	0.82[JPT][hapmap]
rs13240600	0.89[JPT][hapmap]
rs1357319	0.82[JPT][hapmap]
rs1419745	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs15524	0.83[JPT][hapmap]
rs17161698	0.84[EUR][1000 genomes]
rs17161766	0.80[ASN][1000 genomes]
rs17161768	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17161769	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17161772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17161774	1.00[CEU][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161780	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17161783	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1851427	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1859690	0.83[JPT][hapmap]
rs1879859	0.82[JPT][hapmap]
rs1980307	0.84[JPT][hapmap]
rs1985453	0.84[EUR][1000 genomes]
rs2037498	0.82[JPT][hapmap]
rs2037499	0.83[JPT][hapmap]
rs2057906	0.84[EUR][1000 genomes]
rs2222411	0.82[JPT][hapmap]
rs2240384	0.84[JPT][hapmap]
rs2240385	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs2257401	0.83[JPT][hapmap]
rs2269985	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs2272168	0.84[JPT][hapmap]
rs2280600	0.84[JPT][hapmap]
rs2404322	0.84[EUR][1000 genomes]
rs2404770	0.82[JPT][hapmap]
rs2687076	0.82[JPT][hapmap]
rs2687079	0.82[JPT][hapmap]
rs2687081	0.82[JPT][hapmap]
rs2687086	0.88[JPT][hapmap]
rs2687087	0.82[JPT][hapmap]
rs2687133	0.82[JPT][hapmap]
rs2687134	0.81[JPT][hapmap]
rs2687136	0.82[JPT][hapmap]
rs2687139	0.82[JPT][hapmap]
rs2687140	0.81[JPT][hapmap]
rs2687142	0.81[JPT][hapmap]
rs2687144	0.83[JPT][hapmap]
rs2687145	0.82[JPT][hapmap]
rs2740565	0.82[JPT][hapmap]
rs34777615	0.80[ASN][1000 genomes]
rs3735453	0.82[JPT][hapmap]
rs3764815	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs3779354	0.84[JPT][hapmap]
rs3800960	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3823812	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3843540	0.84[JPT][hapmap]
rs41301658	0.80[AFR][1000 genomes]
rs45442295	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45454395	0.84[AFR][1000 genomes]
rs45460091	0.89[AFR][1000 genomes]
rs45492098	0.84[EUR][1000 genomes]
rs45540134	0.84[EUR][1000 genomes]
rs45600842	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45622743	0.84[EUR][1000 genomes]
rs4646440	0.89[AFR][1000 genomes]
rs4646446	0.83[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646447	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646449	0.83[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646453	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646456	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646457	0.83[JPT][hapmap]
rs4646458	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs4646462	0.91[AFR][1000 genomes]
rs58024720	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58222677	0.84[EUR][1000 genomes]
rs59986060	0.84[EUR][1000 genomes]
rs60298785	0.89[AFR][1000 genomes]
rs60301933	0.81[ASN][1000 genomes]
rs60865030	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61159815	0.84[EUR][1000 genomes]
rs61337492	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61402640	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61543997	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6465750	0.83[JPT][hapmap]
rs6961634	0.89[JPT][hapmap]
rs6962772	0.84[JPT][hapmap]
rs72494451	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72494452	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72494453	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72494454	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72494458	0.87[AFR][1000 genomes]
rs776741	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs776746	0.82[JPT][hapmap]
rs7794705	0.84[JPT][hapmap]
rs7808022	0.83[JPT][hapmap]
rs8175345	1.00[YRI][hapmap]
rs868564	0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs917154	0.84[JPT][hapmap]
rs940336	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99196600-99199400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:99196600-99199400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:99197200-99213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:99197800-99203800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:99198400-99213800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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