Variant report

Variant	rs10282706
Chromosome Location	chr7:99217424-99217425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:99217222-99218282	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99153240..99158172-chr7:99212624..99218049,13	K562	blood:
2	chr7:99215348..99218327-chr7:99515747..99519754,4	MCF-7	breast:

Variant related genes	Relation type
ZSCAN25	TF binding region
ENSG00000146833	Chromatin interaction
ENSG00000272647	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000197343	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10211	0.89[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10227637	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10229552	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10238965	0.83[JPT][hapmap]
rs10242455	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10254729	0.83[JPT][hapmap]
rs10258552	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11772470	0.83[JPT][hapmap]
rs12333599	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12334072	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12334077	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12360	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13362853	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1357319	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1403196	0.86[ASN][1000 genomes]
rs1419745	0.85[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs15524	1.00[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17161774	0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs17161780	0.90[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs17161783	0.85[CHB][hapmap]
rs1818797	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1851425	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1859690	0.94[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1879859	0.89[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2037497	0.83[ASN][1000 genomes]
rs2037498	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2037499	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2090949	0.83[ASN][1000 genomes]
rs2140128	0.83[ASN][1000 genomes]
rs2177180	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2222411	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2257401	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2404769	0.83[ASN][1000 genomes]
rs2404770	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2687072	0.83[ASN][1000 genomes]
rs2687075	0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2687076	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2687077	0.86[ASN][1000 genomes]
rs2687078	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2687079	0.89[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2687081	0.89[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2687084	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2687085	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2687086	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2687087	0.89[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2687133	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2687134	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2687135	0.83[ASN][1000 genomes]
rs2687136	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2687137	0.83[ASN][1000 genomes]
rs2687139	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2687140	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2687141	0.83[ASN][1000 genomes]
rs2687142	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2687143	0.83[ASN][1000 genomes]
rs2687144	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2687145	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2740558	0.83[ASN][1000 genomes]
rs2740559	0.83[ASN][1000 genomes]
rs2740560	0.83[ASN][1000 genomes]
rs2740561	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2740562	0.82[ASN][1000 genomes]
rs2740563	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2740565	0.89[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2741872	0.81[ASN][1000 genomes]
rs2948343	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2948344	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3735453	1.00[ASW][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800960	0.81[JPT][hapmap]
rs3823812	0.80[ASN][1000 genomes]
rs45624139	0.83[ASN][1000 genomes]
rs4646446	0.80[CHB][hapmap];0.80[CHD][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs4646447	0.85[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4646449	0.85[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4646450	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs4646453	0.85[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4646456	0.85[CHB][hapmap]
rs4646457	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646458	0.85[CHB][hapmap];0.97[GIH][hapmap]
rs4646461	0.81[ASN][1000 genomes]
rs4646465	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55852703	0.83[ASN][1000 genomes]
rs58024720	0.81[ASN][1000 genomes]
rs58649180	0.81[ASN][1000 genomes]
rs60865030	0.82[ASN][1000 genomes]
rs61337492	0.80[ASN][1000 genomes]
rs6465750	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6961634	0.83[JPT][hapmap]
rs72494455	0.81[ASN][1000 genomes]
rs73410654	0.83[ASN][1000 genomes]
rs776741	0.80[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs776742	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs776744	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs776745	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs776746	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7780328	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7808022	0.94[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs868564	0.80[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9769359	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99215000-99236000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99215400-99219000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:99215400-99221000	Weak transcription	Psoas Muscle	Psoas
4	chr7:99215800-99219800	Weak transcription	Fetal Kidney	kidney
5	chr7:99215800-99229400	Strong transcription	Fetal Muscle Leg	muscle
6	chr7:99215800-99229600	Weak transcription	Right Atrium	heart
7	chr7:99215800-99231800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:99215800-99232200	Strong transcription	Fetal Stomach	stomach
9	chr7:99216000-99224400	Weak transcription	Fetal Heart	heart
10	chr7:99216000-99225600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:99216000-99225800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:99216000-99226000	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:99216000-99228800	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:99216000-99229000	Strong transcription	K562	blood
15	chr7:99216000-99229400	Strong transcription	Fetal Lung	lung
16	chr7:99216000-99231400	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr7:99216200-99217800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr7:99216200-99217800	Genic enhancers	Pancreas	Pancrea
19	chr7:99216200-99219200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:99216200-99220000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:99216200-99220200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:99216200-99220200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:99216200-99220200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:99216200-99220200	Strong transcription	Thymus	Thymus
25	chr7:99216200-99221000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr7:99216200-99221000	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr7:99216200-99221000	Strong transcription	Spleen	Spleen
28	chr7:99216200-99224000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:99216200-99224600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
30	chr7:99216200-99224800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:99216200-99225600	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr7:99216200-99225600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:99216200-99225800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:99216200-99226000	Strong transcription	Brain Anterior Caudate	brain
35	chr7:99216200-99228200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr7:99216200-99229400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr7:99216200-99229400	Strong transcription	Left Ventricle	heart
38	chr7:99216200-99229800	Strong transcription	H9 Cell Line	embryonic stem cell
39	chr7:99216200-99230200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:99216200-99230400	Strong transcription	NHLF	lung
41	chr7:99216200-99230600	Strong transcription	Adipose Nuclei	Adipose
42	chr7:99216200-99231800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:99216200-99231800	Strong transcription	Placenta	Placenta
44	chr7:99216200-99231800	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:99216200-99232000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:99216200-99232000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:99216200-99232000	Strong transcription	Fetal Intestine Large	intestine
48	chr7:99216200-99232200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr7:99216200-99232200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:99216200-99232200	Strong transcription	Lung	lung

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