Variant report

Variant	rs7780328
Chromosome Location	chr7:99256844-99256845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99256740..99260670-chr7:99260944..99264080,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106258	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10211	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10227637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10229552	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10242455	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10258552	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10282706	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12333599	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12334072	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12334077	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12360	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13362853	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1357319	0.82[AMR][1000 genomes]
rs1403196	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs15524	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17161783	0.81[ASN][1000 genomes]
rs1818797	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1851425	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1859690	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1879859	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2037497	0.82[AMR][1000 genomes]
rs2037498	0.82[AMR][1000 genomes]
rs2037499	0.82[AMR][1000 genomes]
rs2090949	0.82[AMR][1000 genomes]
rs2140128	0.82[AMR][1000 genomes]
rs2177180	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2222411	0.82[AMR][1000 genomes]
rs2257401	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2404769	0.82[AMR][1000 genomes]
rs2404770	0.82[AMR][1000 genomes]
rs2687072	0.82[AMR][1000 genomes]
rs2687075	0.82[AMR][1000 genomes]
rs2687076	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2687077	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2687078	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2687079	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2687081	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2687084	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2687085	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2687086	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2687087	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2687136	0.82[AMR][1000 genomes]
rs2687137	0.82[AMR][1000 genomes]
rs2687139	0.82[AMR][1000 genomes]
rs2687140	0.82[AMR][1000 genomes]
rs2687141	0.82[AMR][1000 genomes]
rs2687142	0.82[AMR][1000 genomes]
rs2687143	0.82[AMR][1000 genomes]
rs2687144	0.82[AMR][1000 genomes]
rs2687145	0.82[AMR][1000 genomes]
rs2740558	0.82[AMR][1000 genomes]
rs2740559	0.82[AMR][1000 genomes]
rs2740560	0.82[AMR][1000 genomes]
rs2740561	0.82[AMR][1000 genomes]
rs2740562	0.82[AMR][1000 genomes]
rs2740563	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2740565	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2948343	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2948344	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3735453	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4646450	0.86[ASN][1000 genomes]
rs4646456	0.81[ASN][1000 genomes]
rs4646457	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4646458	0.81[ASN][1000 genomes]
rs4646465	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6465750	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs776742	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs776744	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs776745	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs776746	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7808022	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs868564	0.87[AMR][1000 genomes]
rs9769359	0.98[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99228400-99258000	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:99228400-99258800	Weak transcription	Ovary	ovary
3	chr7:99229200-99267400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:99229200-99275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:99229400-99257400	Weak transcription	Fetal Lung	lung
6	chr7:99229400-99257800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:99229800-99257200	Weak transcription	Esophagus	oesophagus
8	chr7:99229800-99257600	Weak transcription	Pancreas	Pancrea
9	chr7:99229800-99260200	Weak transcription	Left Ventricle	heart
10	chr7:99229800-99272600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:99230200-99257200	Weak transcription	Gastric	stomach
12	chr7:99230400-99257600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:99230400-99272000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:99230800-99258000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:99231800-99258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:99231800-99258000	Weak transcription	Brain Substantia Nigra	brain
17	chr7:99231800-99260200	Weak transcription	K562	blood
18	chr7:99231800-99264600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:99231800-99268000	Weak transcription	Brain Anterior Caudate	brain
20	chr7:99231800-99268600	Weak transcription	HepG2	liver
21	chr7:99232000-99258600	Weak transcription	Primary B cells from cord blood	blood
22	chr7:99232000-99275000	Weak transcription	A549	lung
23	chr7:99233000-99266000	Weak transcription	NHEK	skin
24	chr7:99235800-99276400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:99236800-99258400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:99236800-99260400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:99236800-99263000	Weak transcription	Placenta	Placenta
28	chr7:99237000-99272200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:99237200-99258000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:99237200-99258800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr7:99237200-99264800	Weak transcription	Right Ventricle	heart
32	chr7:99241000-99268800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr7:99241600-99264600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:99242200-99258800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:99242200-99261400	Weak transcription	HSMMtube	muscle
36	chr7:99242400-99272400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:99242800-99261000	Weak transcription	Aorta	Aorta
38	chr7:99242800-99267600	Weak transcription	GM12878-XiMat	blood
39	chr7:99243000-99278800	Weak transcription	Brain Angular Gyrus	brain
40	chr7:99243200-99267600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:99243400-99257600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:99243600-99276800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:99245000-99257400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr7:99247800-99266800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr7:99249600-99257000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:99249600-99257600	Weak transcription	Colonic Mucosa	Colon
47	chr7:99249800-99257400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr7:99250400-99258200	Weak transcription	Primary T cells from cord blood	blood
49	chr7:99250800-99257600	Weak transcription	Adipose Nuclei	Adipose
50	chr7:99251600-99257200	Weak transcription	Rectal Mucosa Donor 29	rectum

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