Variant report

Variant	rs776742
Chromosome Location	chr7:99292755-99292756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99277038..99279946-chr7:99291489..99293393,2	K562	blood:

Variant related genes	Relation type
ENSG00000106258	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10227637	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10229552	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10242455	0.89[ASN][1000 genomes]
rs10258552	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10282706	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12333599	0.84[ASN][1000 genomes]
rs12334072	0.87[ASN][1000 genomes]
rs12334077	0.88[ASN][1000 genomes]
rs12360	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13362853	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1357319	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1403196	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419745	0.82[ASN][1000 genomes]
rs15524	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1818797	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1851425	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1851427	0.86[ASN][1000 genomes]
rs1859690	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1879859	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037497	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2037498	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2037499	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2090949	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2140128	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2177180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2222411	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2257401	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2404769	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2404770	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687072	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687075	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2687076	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2687077	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2687078	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2687079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2687081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2687084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2687085	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2687086	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2687087	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2687133	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2687134	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2687135	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687136	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687137	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687139	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687140	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687141	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687142	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687143	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687144	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2687145	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740558	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740559	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740560	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740561	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740562	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2740563	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2740565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2741872	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2948343	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2948344	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3735453	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3823812	0.83[ASN][1000 genomes]
rs45442295	0.84[ASN][1000 genomes]
rs45600842	0.84[ASN][1000 genomes]
rs45624139	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4646446	0.83[ASN][1000 genomes]
rs4646447	0.82[ASN][1000 genomes]
rs4646449	0.82[ASN][1000 genomes]
rs4646450	0.89[ASN][1000 genomes]
rs4646453	0.82[ASN][1000 genomes]
rs4646457	0.89[ASN][1000 genomes]
rs4646461	0.93[ASN][1000 genomes]
rs4646462	0.83[ASN][1000 genomes]
rs4646465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55852703	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58024720	0.82[ASN][1000 genomes]
rs58649180	0.93[ASN][1000 genomes]
rs59172435	0.83[ASN][1000 genomes]
rs60298785	0.83[ASN][1000 genomes]
rs61593387	0.83[ASN][1000 genomes]
rs6465750	0.91[ASN][1000 genomes]
rs72494453	0.88[ASN][1000 genomes]
rs72494454	0.86[ASN][1000 genomes]
rs72494455	0.93[ASN][1000 genomes]
rs72494456	0.83[ASN][1000 genomes]
rs73410654	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776739	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs776741	0.83[ASN][1000 genomes]
rs776744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776746	0.93[ASN][1000 genomes]
rs7780328	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7798931	0.80[ASN][1000 genomes]
rs7808022	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs939955	0.83[ASN][1000 genomes]
rs9769359	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99277000-99295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:99290600-99293200	Enhancers	Fetal Intestine Large	intestine
3	chr7:99290600-99293600	Enhancers	Fetal Intestine Small	intestine
4	chr7:99290800-99293000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr7:99291400-99293000	Weak transcription	Gastric	stomach
6	chr7:99291400-99297600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:99291400-99297600	Weak transcription	Esophagus	oesophagus
8	chr7:99291400-99298800	Weak transcription	Aorta	Aorta
9	chr7:99291400-99306600	Weak transcription	Left Ventricle	heart
10	chr7:99291600-99294600	Weak transcription	Fetal Thymus	thymus
11	chr7:99291600-99295600	Weak transcription	Pancreas	Pancrea
12	chr7:99291800-99292800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:99291800-99293200	Weak transcription	Fetal Lung	lung
14	chr7:99292200-99292800	Flanking Active TSS	Liver	Liver
15	chr7:99292200-99294600	Enhancers	K562	blood
16	chr7:99292200-99296200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:99292200-99296200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:99292200-99297000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:99292400-99295800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:99292400-99295800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:99292400-99295800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:99292400-99295800	Weak transcription	Stomach Mucosa	stomach
23	chr7:99292400-99296000	Weak transcription	A549	lung
24	chr7:99292400-99296400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:99292400-99298600	Enhancers	HepG2	liver

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