Variant report

Variant	rs776739
Chromosome Location	chr7:99283696-99283697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99277694..99280617-chr7:99280662..99284055,5	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10211	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12360	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1357319	0.86[EUR][1000 genomes]
rs1403196	0.86[EUR][1000 genomes]
rs1818797	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1851425	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1879859	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2037497	0.86[EUR][1000 genomes]
rs2037498	0.86[EUR][1000 genomes]
rs2037499	0.86[EUR][1000 genomes]
rs2090949	0.86[EUR][1000 genomes]
rs2140128	0.86[EUR][1000 genomes]
rs2177180	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2222411	0.86[EUR][1000 genomes]
rs2257401	0.86[EUR][1000 genomes]
rs2404769	0.84[EUR][1000 genomes]
rs2404770	0.86[EUR][1000 genomes]
rs2687072	0.86[EUR][1000 genomes]
rs2687075	0.86[EUR][1000 genomes]
rs2687076	0.86[EUR][1000 genomes]
rs2687077	0.86[EUR][1000 genomes]
rs2687078	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2687079	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2687081	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2687084	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2687085	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2687086	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2687087	0.86[EUR][1000 genomes]
rs2687135	0.80[EUR][1000 genomes]
rs2687136	0.86[EUR][1000 genomes]
rs2687137	0.86[EUR][1000 genomes]
rs2687139	0.86[EUR][1000 genomes]
rs2687140	0.82[EUR][1000 genomes]
rs2687141	0.86[EUR][1000 genomes]
rs2687142	0.86[EUR][1000 genomes]
rs2687143	0.86[EUR][1000 genomes]
rs2687144	0.86[EUR][1000 genomes]
rs2687145	0.86[EUR][1000 genomes]
rs2740558	0.86[EUR][1000 genomes]
rs2740559	0.86[EUR][1000 genomes]
rs2740560	0.86[EUR][1000 genomes]
rs2740561	0.86[EUR][1000 genomes]
rs2740562	0.86[EUR][1000 genomes]
rs2740563	0.86[EUR][1000 genomes]
rs2740565	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2948343	0.83[AMR][1000 genomes]
rs2948344	0.83[AMR][1000 genomes]
rs45624139	0.81[EUR][1000 genomes]
rs4646465	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55852703	0.81[EUR][1000 genomes]
rs73410654	0.81[EUR][1000 genomes]
rs776742	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs776744	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs776745	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs776746	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99273800-99290400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:99277000-99295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:99278000-99290800	Weak transcription	Pancreas	Pancrea
4	chr7:99278400-99289000	Weak transcription	Psoas Muscle	Psoas
5	chr7:99282800-99283800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:99283000-99283800	Enhancers	HepG2	liver
7	chr7:99283200-99284000	Weak transcription	Stomach Mucosa	stomach
8	chr7:99283400-99283800	Flanking Active TSS	K562	blood

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