Variant report

Variant	rs868564
Chromosome Location	chr7:99202373-99202374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99198781..99203463-chr7:99212852..99216698,6	K562	blood:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1011024	0.91[ASN][1000 genomes]
rs10211	0.80[CHB][hapmap];0.83[JPT][hapmap];0.81[YRI][hapmap]
rs10225314	0.89[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs10227637	0.87[AMR][1000 genomes]
rs10229552	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10238028	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238965	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10240199	0.81[ASN][1000 genomes]
rs10242455	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs10254729	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10258552	0.82[AMR][1000 genomes]
rs10271049	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10282706	0.80[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1043466	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs11772470	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11976018	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12360	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap]
rs13240600	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs13362853	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1357319	0.83[JPT][hapmap]
rs15524	0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17161771	0.86[ASN][1000 genomes]
rs17161772	0.86[ASN][1000 genomes]
rs1859690	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1879859	0.80[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap]
rs1980307	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2037498	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2037499	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2222411	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2240384	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2240385	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2257401	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2272168	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2280600	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2280601	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2404770	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2687075	0.80[CHB][hapmap]
rs2687076	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2687079	0.80[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap]
rs2687081	0.83[CHB][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap]
rs2687086	0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap]
rs2687087	0.80[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap]
rs2687133	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2687134	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2687136	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2687139	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2687140	0.83[JPT][hapmap]
rs2687142	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs2687144	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2687145	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2740561	0.87[JPT][hapmap]
rs2740565	0.80[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap]
rs3137	0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs34777615	0.88[ASN][1000 genomes]
rs3735453	0.85[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3779354	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs3800960	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs3843540	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4646450	0.80[CHB][hapmap]
rs4646457	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs6465750	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs6961634	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6962772	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs776746	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs7780328	0.87[AMR][1000 genomes]
rs7794705	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7804551	0.80[ASN][1000 genomes]
rs7808022	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs917154	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs940336	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs9769359	0.85[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99197200-99213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:99197800-99203800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:99198400-99213800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:99199800-99214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:99201000-99203600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:99201000-99203600	Weak transcription	HepG2	liver

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