Variant report

Variant	rs10238028
Chromosome Location	chr7:99208899-99208900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000196652	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000244219	Chromatin interaction
ENSG00000160908	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10242455	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12333599	0.91[AMR][1000 genomes]
rs12334072	0.86[AMR][1000 genomes]
rs12334077	0.91[AMR][1000 genomes]
rs13362853	0.83[EUR][1000 genomes]
rs15524	0.80[ASN][1000 genomes]
rs1859690	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4646457	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6465750	0.91[AMR][1000 genomes]
rs776746	0.85[AMR][1000 genomes]
rs7808022	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs868564	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99197200-99213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:99198400-99213800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:99199800-99214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:99202400-99209400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:99204200-99213600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:99205400-99213400	Weak transcription	HepG2	liver
7	chr7:99207800-99210000	Strong transcription	Placenta	Placenta
8	chr7:99207800-99213800	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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