Variant report

Variant	rs2107705
Chromosome Location	chr7:98926659-98926660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98914804..98917756-chr7:98926005..98927649,2	K562	blood:
2	chr7:98921655..98927239-chr7:98969297..98973851,7	MCF-7	breast:
3	chr7:98476027..98477685-chr7:98926300..98928393,2	K562	blood:
4	chr7:98926029..98929267-chr7:99005102..99007231,3	K562	blood:
5	chr7:98925619..98928063-chr7:99006753..99008418,2	MCF-7	breast:
6	chr7:98923496..98925554-chr7:98925570..98927250,2	MCF-7	breast:
7	chr7:98921250..98923226-chr7:98924796..98927676,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196367	Chromatin interaction
ENSG00000241685	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000130429	Chromatin interaction
ENSG00000106245	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1002172	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1004387	0.83[EUR][1000 genomes]
rs10267346	0.83[ASN][1000 genomes]
rs10464604	1.00[EUR][1000 genomes]
rs11539770	1.00[EUR][1000 genomes]
rs17161652	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17161677	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17161698	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1985453	1.00[EUR][1000 genomes]
rs2057906	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2240385	1.00[EUR][1000 genomes]
rs2269985	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2404322	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3764815	1.00[EUR][1000 genomes]
rs3800960	1.00[EUR][1000 genomes]
rs45492098	1.00[EUR][1000 genomes]
rs45540134	1.00[EUR][1000 genomes]
rs45622743	1.00[EUR][1000 genomes]
rs58222677	1.00[EUR][1000 genomes]
rs58421977	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58999322	0.95[ASN][1000 genomes]
rs59986060	1.00[EUR][1000 genomes]
rs61159815	1.00[EUR][1000 genomes]
rs61402640	1.00[EUR][1000 genomes]
rs61543997	1.00[EUR][1000 genomes]
rs73709637	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73709641	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs940336	1.00[EUR][1000 genomes]
rs9768020	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98924400-98926800	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr7:98924400-98928000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:98924400-98957200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:98924600-98926800	Enhancers	Primary B cells from peripheral blood	blood
5	chr7:98924600-98928200	Weak transcription	Esophagus	oesophagus
6	chr7:98924600-98929800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:98924600-98930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:98924600-98971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:98924800-98926800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:98924800-98926800	Enhancers	Colon Smooth Muscle	Colon
11	chr7:98924800-98927000	Enhancers	Fetal Heart	heart
12	chr7:98924800-98927400	Enhancers	Brain Hippocampus Middle	brain
13	chr7:98924800-98928400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:98924800-98928400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:98924800-98928400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:98924800-98929200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:98924800-98929200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr7:98924800-98930000	Enhancers	Stomach Mucosa	stomach
19	chr7:98924800-98930800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:98924800-98930800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:98924800-98930800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:98924800-98930800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:98924800-98930800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:98924800-98931000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:98924800-98931000	Weak transcription	Fetal Kidney	kidney
26	chr7:98924800-98932600	Weak transcription	Aorta	Aorta
27	chr7:98924800-98935600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:98924800-98935600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:98924800-98935800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:98924800-98936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:98925000-98927600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:98925000-98927800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr7:98925000-98928400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr7:98925000-98931000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr7:98925200-98927200	Weak transcription	Primary B cells from cord blood	blood
36	chr7:98925200-98928800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr7:98925200-98929600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:98925200-98930800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr7:98925200-98965200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:98925400-98927000	Weak transcription	HSMMtube	muscle
41	chr7:98925400-98928400	Enhancers	Brain Germinal Matrix	brain
42	chr7:98925400-98928400	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr7:98925400-98929000	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr7:98925400-98935600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:98925600-98926800	Enhancers	Left Ventricle	heart
46	chr7:98925600-98927000	Weak transcription	Fetal Lung	lung
47	chr7:98925600-98927000	Enhancers	K562	blood
48	chr7:98925600-98927200	Weak transcription	Small Intestine	intestine
49	chr7:98925600-98927400	Enhancers	Fetal Brain Female	brain
50	chr7:98925600-98927600	Enhancers	Duodenum Smooth Muscle	Duodenum

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