Variant report

Variant	rs73709641
Chromosome Location	chr7:98918916-98918917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98739456..98741292-chr7:98918688..98921036,2	MCF-7	breast:
2	chr7:98900840..98902413-chr7:98917008..98919027,2	K562	blood:
3	chr7:98912186..98914014-chr7:98918114..98920707,2	MCF-7	breast:
4	chr11:65265764..65267857-chr7:98918164..98919921,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270117	Chromatin interaction
ENSG00000002079	Chromatin interaction
ENSG00000251562	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1002172	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1004387	0.83[EUR][1000 genomes]
rs10267346	0.85[ASN][1000 genomes]
rs10464604	1.00[EUR][1000 genomes]
rs11539770	1.00[EUR][1000 genomes]
rs17161652	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17161677	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17161698	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1985453	1.00[EUR][1000 genomes]
rs2057906	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2107705	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2240385	1.00[EUR][1000 genomes]
rs2269985	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2404322	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3764815	1.00[EUR][1000 genomes]
rs45492098	1.00[EUR][1000 genomes]
rs45540134	1.00[EUR][1000 genomes]
rs45622743	1.00[EUR][1000 genomes]
rs58222677	1.00[EUR][1000 genomes]
rs58421977	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58999322	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs59986060	1.00[EUR][1000 genomes]
rs61159815	1.00[EUR][1000 genomes]
rs61402640	1.00[EUR][1000 genomes]
rs61543997	1.00[EUR][1000 genomes]
rs73709637	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs940336	1.00[EUR][1000 genomes]
rs9768020	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98908200-98922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:98908400-98921800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:98908400-98923000	Weak transcription	Aorta	Aorta
4	chr7:98910200-98921800	Weak transcription	Right Ventricle	heart
5	chr7:98910600-98922600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:98911000-98922400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:98911000-98922400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:98911000-98922600	Weak transcription	NHLF	lung
9	chr7:98911200-98922600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:98911400-98922600	Weak transcription	A549	lung
11	chr7:98912200-98921800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:98912400-98919000	Weak transcription	Stomach Mucosa	stomach
13	chr7:98912600-98921800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:98912600-98922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:98915000-98922600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:98918000-98919000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:98918200-98919800	Weak transcription	Left Ventricle	heart
18	chr7:98918600-98920000	Enhancers	HUVEC	blood vessel
19	chr7:98918600-98921800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:98918600-98922200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:98918600-98922400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:98918600-98922400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:98918600-98922400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:98918600-98922400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:98918600-98922600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:98918800-98919200	Flanking Active TSS	Fetal Heart	heart
27	chr7:98918800-98922400	Weak transcription	Fetal Intestine Small	intestine

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