Variant report

Variant	rs10271582
Chromosome Location	chr7:99121950-99121951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99119948..99122380-chr7:99646382..99648993,2	MCF-7	breast:
2	chr7:99102510..99104412-chr7:99119717..99122482,2	K562	blood:

Variant related genes	Relation type
ENSG00000166529	Chromatin interaction
ENSG00000196652	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1011024	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238965	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10244158	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10253937	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10254729	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10271049	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1043466	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11976018	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13227795	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13240600	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13437771	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1980307	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2240384	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2272168	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2280600	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2280601	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28457808	0.81[ASN][1000 genomes]
rs3137	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34777615	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3779354	0.88[ASN][1000 genomes]
rs3843540	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3901286	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60301933	0.83[ASN][1000 genomes]
rs61402640	0.83[ASN][1000 genomes]
rs61543997	0.83[ASN][1000 genomes]
rs6962772	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7794682	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7794705	0.83[ASN][1000 genomes]
rs7804551	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs883403	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs917154	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99103800-99125600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:99104200-99123000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:99105000-99126000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:99105000-99126400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:99105000-99128000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:99105000-99128000	Weak transcription	Fetal Heart	heart
7	chr7:99105000-99128800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:99105000-99129400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:99105400-99125400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:99105400-99126200	Weak transcription	Stomach Mucosa	stomach
11	chr7:99105600-99124400	Weak transcription	Psoas Muscle	Psoas
12	chr7:99107000-99126000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:99107400-99126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:99107600-99126000	Strong transcription	Fetal Stomach	stomach
15	chr7:99108400-99126000	Strong transcription	Fetal Thymus	thymus
16	chr7:99108600-99125200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:99108600-99126200	Strong transcription	Dnd41	blood
18	chr7:99110400-99122400	Weak transcription	Right Ventricle	heart
19	chr7:99111800-99123400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:99112200-99123600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:99112400-99127400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:99113200-99127800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:99113600-99125600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:99114400-99123000	Weak transcription	Colonic Mucosa	Colon
25	chr7:99114600-99123000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:99114600-99123000	Weak transcription	Small Intestine	intestine
27	chr7:99114600-99123000	Weak transcription	NHEK	skin
28	chr7:99114600-99123200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:99114600-99123200	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:99114600-99123400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:99114600-99123600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:99114600-99123600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:99114600-99123600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr7:99114600-99123600	Weak transcription	Pancreas	Pancrea
35	chr7:99114600-99123800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr7:99114800-99123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:99114800-99126400	Weak transcription	Fetal Brain Male	brain
38	chr7:99115200-99123200	Weak transcription	Brain Angular Gyrus	brain
39	chr7:99115800-99123400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:99116200-99123400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr7:99116800-99126200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr7:99117000-99125400	Strong transcription	Liver	Liver
43	chr7:99117000-99125600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr7:99117000-99126000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr7:99117000-99126200	Strong transcription	HSMMtube	muscle
46	chr7:99117200-99125800	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:99117800-99122400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr7:99117800-99123000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:99117800-99123000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:99117800-99123200	Weak transcription	Fetal Lung	lung

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