The 2.0 version of rSNPBase

Variant report

Variant rs12539480
Chromosome Location chr7:98922222-98922223
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:98908200-98922600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr7:98908400-98923000 Weak transcription Aorta Aorta
3 chr7:98910600-98922600 Weak transcription Brain Inferior Temporal Lobe brain
4 chr7:98911000-98922400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr7:98911000-98922400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr7:98911000-98922600 Weak transcription NHLF lung
7 chr7:98911200-98922600 Weak transcription Brain Substantia Nigra brain
8 chr7:98911400-98922600 Weak transcription A549 lung
9 chr7:98915000-98922600 Weak transcription H9 Cell Line embryonic stem cell
10 chr7:98918600-98922400 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr7:98918600-98922400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr7:98918600-98922400 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr7:98918600-98922400 Weak transcription iPS-18 Cell Line embryonic stem cell
14 chr7:98918600-98922600 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr7:98918800-98922400 Weak transcription Fetal Intestine Small intestine
16 chr7:98919000-98922400 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr7:98919400-98922600 Weak transcription Stomach Mucosa stomach
18 chr7:98920000-98922600 Weak transcription Fetal Heart heart
19 chr7:98920000-98922600 Weak transcription HUVEC blood vessel
20 chr7:98920400-98922800 Weak transcription Left Ventricle heart
21 chr7:98920600-98922600 Weak transcription Fetal Stomach stomach
22 chr7:98921800-98922600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
23 chr7:98921800-98922600 Enhancers Brain Germinal Matrix brain
24 chr7:98921800-98922600 Enhancers Right Ventricle heart
25 chr7:98921800-98922800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr7:98921800-98922800 Enhancers Liver Liver
27 chr7:98921800-98922800 Enhancers Pancreas Pancrea
28 chr7:98922000-98922400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
29 chr7:98922000-98922400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
30 chr7:98922000-98922400 Weak transcription GM12878-XiMat blood
31 chr7:98922000-98922400 Active TSS Hela-S3 cervix
32 chr7:98922000-98922600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
33 chr7:98922000-98922600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr7:98922200-98922400 Enhancers Primary hematopoietic stem cells short term culture blood
35 chr7:98922200-98922400 Enhancers Primary T helper cells fromperipheralblood blood
36 chr7:98922200-98922400 Enhancers Cortex derived primary cultured neurospheres brain
37 chr7:98922200-98922400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
38 chr7:98922200-98922400 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr7:98922200-98922400 Enhancers Psoas Muscle Psoas
40 chr7:98922200-98922400 Enhancers Dnd41 blood
41 chr7:98922200-98922600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
42 chr7:98922200-98922600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr7:98922200-98922600 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr7:98922200-98922600 Enhancers Skeletal Muscle Female skeletal muscle
45 chr7:98922200-98922800 Flanking Active TSS HepG2 liver
46 chr7:98922200-98923200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr7:98922200-98924800 Active TSS HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015