Variant report

Variant	rs55761861
Chromosome Location	chr7:98817858-98817859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98760252..98762397-chr7:98816218..98818322,2	MCF-7	breast:
2	chr7:98807183..98812417-chr7:98813436..98818450,10	MCF-7	breast:
3	chr7:98740663..98743430-chr7:98816685..98821148,3	MCF-7	breast:
4	chr7:98740809..98742984-chr7:98815665..98818080,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10215854	1.00[ASN][1000 genomes]
rs10229886	1.00[ASN][1000 genomes]
rs10236240	1.00[ASN][1000 genomes]
rs10268984	1.00[ASN][1000 genomes]
rs10275381	1.00[ASN][1000 genomes]
rs10277447	1.00[ASN][1000 genomes]
rs10953288	1.00[ASN][1000 genomes]
rs10953289	1.00[ASN][1000 genomes]
rs11555142	1.00[ASN][1000 genomes]
rs11971640	1.00[ASN][1000 genomes]
rs11973173	1.00[ASN][1000 genomes]
rs11973529	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11974593	1.00[ASN][1000 genomes]
rs11978345	1.00[ASN][1000 genomes]
rs11978582	1.00[ASN][1000 genomes]
rs11980143	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980995	1.00[ASN][1000 genomes]
rs11980999	1.00[ASN][1000 genomes]
rs11983474	1.00[ASN][1000 genomes]
rs12531852	1.00[ASN][1000 genomes]
rs12536002	1.00[ASN][1000 genomes]
rs12539480	1.00[ASN][1000 genomes]
rs17161687	1.00[ASN][1000 genomes]
rs2003498	1.00[ASN][1000 genomes]
rs28419687	1.00[ASN][1000 genomes]
rs35183025	1.00[ASN][1000 genomes]
rs35656351	1.00[ASN][1000 genomes]
rs45618033	1.00[ASN][1000 genomes]
rs4765	1.00[ASN][1000 genomes]
rs57786744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57980352	1.00[ASN][1000 genomes]
rs58964157	1.00[ASN][1000 genomes]
rs60127638	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60577432	1.00[ASN][1000 genomes]
rs61740607	1.00[ASN][1000 genomes]
rs66478766	1.00[ASN][1000 genomes]
rs66568021	1.00[ASN][1000 genomes]
rs66674233	1.00[ASN][1000 genomes]
rs67279166	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67309224	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67546174	1.00[ASN][1000 genomes]
rs67860332	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67909852	1.00[ASN][1000 genomes]
rs67934834	1.00[ASN][1000 genomes]
rs6955891	1.00[ASN][1000 genomes]
rs6960810	1.00[ASN][1000 genomes]
rs704798	1.00[ASN][1000 genomes]
rs73157575	0.87[AMR][1000 genomes]
rs73157578	0.86[EUR][1000 genomes]
rs73157580	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157581	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157582	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157584	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157585	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157589	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157590	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157596	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157600	1.00[ASN][1000 genomes]
rs73157601	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157602	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159506	1.00[ASN][1000 genomes]
rs73159509	1.00[ASN][1000 genomes]
rs73159522	1.00[ASN][1000 genomes]
rs73163167	1.00[ASN][1000 genomes]
rs73163169	1.00[ASN][1000 genomes]
rs740160	1.00[ASN][1000 genomes]
rs7778859	1.00[ASN][1000 genomes]
rs868391	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98811000-98827600	Weak transcription	Right Atrium	heart
3	chr7:98816600-98822000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:98817200-98821600	Weak transcription	A549	lung
5	chr7:98817200-98822200	Weak transcription	Fetal Intestine Small	intestine
6	chr7:98817400-98821400	Weak transcription	Stomach Mucosa	stomach
7	chr7:98817400-98821800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:98817600-98818200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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