Variant report

Variant	rs73157575
Chromosome Location	chr7:98810388-98810389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98807183..98812417-chr7:98813436..98818450,10	MCF-7	breast:
2	chr7:98807265..98810785-chr7:98821071..98827725,5	MCF-7	breast:
3	chr7:98665283..98667310-chr7:98810047..98812572,2	MCF-7	breast:
4	chr7:98810224..98811825-chr7:98864606..98866585,2	MCF-7	breast:
5	chr7:98797515..98801446-chr7:98806232..98810784,4	MCF-7	breast:
6	chr7:98807837..98811719-chr7:98828623..98830666,3	MCF-7	breast:
7	chr7:98694785..98697794-chr7:98808193..98811176,3	MCF-7	breast:
8	chr7:98808636..98811320-chr7:98812026..98815181,4	MCF-7	breast:
9	chr7:98808174..98810651-chr7:98856542..98858905,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11973529	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55761861	0.87[AMR][1000 genomes]
rs57786744	0.87[AMR][1000 genomes]
rs60127638	0.80[EUR][1000 genomes]
rs73157580	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73157581	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73157582	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73157584	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73157585	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73157587	0.87[AMR][1000 genomes]
rs73157588	0.87[AMR][1000 genomes]
rs73157589	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73157590	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs868391	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98805000-98811400	Enhancers	Fetal Intestine Large	intestine
3	chr7:98805400-98811400	Enhancers	Pancreas	Pancrea
4	chr7:98808400-98811600	Enhancers	Stomach Mucosa	stomach
5	chr7:98809800-98810400	Enhancers	Liver	Liver
6	chr7:98809800-98810600	Enhancers	A549	lung
7	chr7:98810000-98810400	Flanking Active TSS	HepG2	liver
8	chr7:98810000-98810600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:98810000-98811400	Enhancers	Fetal Intestine Small	intestine
10	chr7:98810200-98810400	Enhancers	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links