Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:98760252..98762397-chr7:98816218..98818322,2	MCF-7	breast:
2	chr7:98807183..98812417-chr7:98813436..98818450,10	MCF-7	breast:
3	chr7:98740809..98742984-chr7:98815665..98818080,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11973529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11980143	0.97[EUR][1000 genomes]
rs55761861	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57786744	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60127638	1.00[EUR][1000 genomes]
rs67279166	0.93[EUR][1000 genomes]
rs67309224	0.93[EUR][1000 genomes]
rs67860332	0.86[EUR][1000 genomes]
rs73157575	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73157578	0.89[EUR][1000 genomes]
rs73157580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157584	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157585	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157587	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157588	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157596	0.89[EUR][1000 genomes]
rs73157601	0.83[EUR][1000 genomes]
rs73157602	0.83[EUR][1000 genomes]
rs868391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98811000-98827600	Weak transcription	Right Atrium	heart
3	chr7:98814000-98817400	Enhancers	Stomach Mucosa	stomach
4	chr7:98815000-98816800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:98815600-98816800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:98815800-98816400	Enhancers	Primary hematopoietic stem cells	blood
7	chr7:98815800-98816800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:98816000-98816400	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr7:98816000-98816600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr7:98816000-98816600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:98816000-98816600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:98816000-98816800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr7:98816000-98816800	Flanking Bivalent TSS/Enh	HepG2	liver
14	chr7:98816000-98817200	Enhancers	Fetal Intestine Small	intestine
15	chr7:98816000-98817200	Enhancers	A549	lung
16	chr7:98816000-98817400	Enhancers	Fetal Intestine Large	intestine
17	chr7:98816200-98816400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:98816200-98816400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr7:98816200-98816800	Enhancers	Gastric	stomach
20	chr7:98816200-98817400	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search: