Variant report

Variant	rs73157596
Chromosome Location	chr7:98839450-98839451
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10215854	1.00[ASN][1000 genomes]
rs10229886	1.00[ASN][1000 genomes]
rs10236240	1.00[ASN][1000 genomes]
rs10268984	1.00[ASN][1000 genomes]
rs10275381	1.00[ASN][1000 genomes]
rs10277447	1.00[ASN][1000 genomes]
rs10953288	1.00[ASN][1000 genomes]
rs10953289	1.00[ASN][1000 genomes]
rs11555142	1.00[ASN][1000 genomes]
rs11971640	1.00[ASN][1000 genomes]
rs11973173	1.00[ASN][1000 genomes]
rs11973529	0.86[EUR][1000 genomes]
rs11974593	1.00[ASN][1000 genomes]
rs11978345	1.00[ASN][1000 genomes]
rs11978582	1.00[ASN][1000 genomes]
rs11980143	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980995	1.00[ASN][1000 genomes]
rs11980999	1.00[ASN][1000 genomes]
rs11983474	1.00[ASN][1000 genomes]
rs12531852	1.00[ASN][1000 genomes]
rs12535424	1.00[ASN][1000 genomes]
rs12536002	1.00[ASN][1000 genomes]
rs12539480	1.00[ASN][1000 genomes]
rs13227522	1.00[ASN][1000 genomes]
rs13243267	1.00[ASN][1000 genomes]
rs17161687	1.00[ASN][1000 genomes]
rs2003498	1.00[ASN][1000 genomes]
rs28419687	1.00[ASN][1000 genomes]
rs28602855	1.00[ASN][1000 genomes]
rs28627543	1.00[ASN][1000 genomes]
rs35183025	1.00[ASN][1000 genomes]
rs35296070	1.00[ASN][1000 genomes]
rs35656351	1.00[ASN][1000 genomes]
rs45618033	1.00[ASN][1000 genomes]
rs4765	1.00[ASN][1000 genomes]
rs55761861	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57786744	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57980352	1.00[ASN][1000 genomes]
rs58964157	1.00[ASN][1000 genomes]
rs60127638	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60577432	1.00[ASN][1000 genomes]
rs61740607	1.00[ASN][1000 genomes]
rs66478766	1.00[ASN][1000 genomes]
rs66568021	1.00[ASN][1000 genomes]
rs66674233	1.00[ASN][1000 genomes]
rs67279166	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67309224	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67546174	1.00[ASN][1000 genomes]
rs67860332	1.00[ASN][1000 genomes]
rs67909852	1.00[ASN][1000 genomes]
rs67934834	1.00[ASN][1000 genomes]
rs6955891	1.00[ASN][1000 genomes]
rs6960810	1.00[ASN][1000 genomes]
rs704798	1.00[ASN][1000 genomes]
rs73157578	0.93[EUR][1000 genomes]
rs73157580	0.89[EUR][1000 genomes]
rs73157581	0.89[EUR][1000 genomes]
rs73157582	0.89[EUR][1000 genomes]
rs73157584	0.89[EUR][1000 genomes]
rs73157585	0.89[EUR][1000 genomes]
rs73157587	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157588	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157589	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157590	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157600	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157601	1.00[ASN][1000 genomes]
rs73157602	1.00[ASN][1000 genomes]
rs73159506	1.00[ASN][1000 genomes]
rs73159509	1.00[ASN][1000 genomes]
rs73159522	1.00[ASN][1000 genomes]
rs73163167	1.00[ASN][1000 genomes]
rs73163169	1.00[ASN][1000 genomes]
rs740160	1.00[ASN][1000 genomes]
rs7778859	1.00[ASN][1000 genomes]
rs868391	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98823800-98849600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98827400-98842000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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