Variant report

Variant	rs73157600
Chromosome Location	chr7:98853319-98853320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr7:98853177-98853473	K562	blood:	n/a	chr7:98853309-98853320 chr7:98853310-98853320
2	POLR2A	chr7:98853045-98853443	K562	blood:	n/a	n/a
3	EGR1	chr7:98853156-98853431	K562	blood:	n/a	chr7:98853309-98853320 chr7:98853310-98853320
4	MAX	chr7:98853153-98853552	NB4	blood:	n/a	chr7:98853160-98853171

No.	Distal block	Cell Line	Cell type
1	chr7:98852401..98854849-chr7:98856529..98858154,2	MCF-7	breast:
2	chr7:98852104..98853933-chr7:98919430..98921281,2	MCF-7	breast:
3	chr7:98850435..98853415-chr7:98922113..98924337,2	MCF-7	breast:

Variant related genes	Relation type
MYH16	TF binding region
ENSG00000241685	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10215854	1.00[ASN][1000 genomes]
rs10229886	1.00[ASN][1000 genomes]
rs10235235	1.00[ASN][1000 genomes]
rs10236240	1.00[ASN][1000 genomes]
rs10268984	1.00[ASN][1000 genomes]
rs10275381	1.00[ASN][1000 genomes]
rs10277447	1.00[ASN][1000 genomes]
rs10808112	1.00[ASN][1000 genomes]
rs10953288	1.00[ASN][1000 genomes]
rs10953289	1.00[ASN][1000 genomes]
rs11555142	1.00[ASN][1000 genomes]
rs11971640	1.00[ASN][1000 genomes]
rs11973173	1.00[ASN][1000 genomes]
rs11974593	1.00[ASN][1000 genomes]
rs11978345	1.00[ASN][1000 genomes]
rs11978582	1.00[ASN][1000 genomes]
rs11980143	1.00[ASN][1000 genomes]
rs11980995	1.00[ASN][1000 genomes]
rs11980999	1.00[ASN][1000 genomes]
rs11983474	1.00[ASN][1000 genomes]
rs12531852	1.00[ASN][1000 genomes]
rs12535424	1.00[ASN][1000 genomes]
rs12536002	1.00[ASN][1000 genomes]
rs12539480	1.00[ASN][1000 genomes]
rs13227522	1.00[ASN][1000 genomes]
rs13243267	1.00[ASN][1000 genomes]
rs17161687	1.00[ASN][1000 genomes]
rs2003498	1.00[ASN][1000 genomes]
rs28419687	1.00[ASN][1000 genomes]
rs28602855	1.00[ASN][1000 genomes]
rs28627543	1.00[ASN][1000 genomes]
rs35183025	1.00[ASN][1000 genomes]
rs35296070	1.00[ASN][1000 genomes]
rs35656351	1.00[ASN][1000 genomes]
rs45618033	1.00[ASN][1000 genomes]
rs4765	1.00[ASN][1000 genomes]
rs55761861	1.00[ASN][1000 genomes]
rs57786744	1.00[ASN][1000 genomes]
rs57980352	1.00[ASN][1000 genomes]
rs58964157	1.00[ASN][1000 genomes]
rs60127638	1.00[ASN][1000 genomes]
rs60577432	1.00[ASN][1000 genomes]
rs61740607	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66478766	1.00[ASN][1000 genomes]
rs66568021	1.00[ASN][1000 genomes]
rs66674233	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67279166	1.00[ASN][1000 genomes]
rs67309224	1.00[ASN][1000 genomes]
rs67546174	1.00[ASN][1000 genomes]
rs67860332	1.00[ASN][1000 genomes]
rs67909852	1.00[ASN][1000 genomes]
rs67934834	1.00[ASN][1000 genomes]
rs6955891	1.00[ASN][1000 genomes]
rs6960810	1.00[ASN][1000 genomes]
rs704798	1.00[ASN][1000 genomes]
rs73157587	1.00[ASN][1000 genomes]
rs73157588	1.00[ASN][1000 genomes]
rs73157589	1.00[ASN][1000 genomes]
rs73157590	1.00[ASN][1000 genomes]
rs73157596	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157601	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157602	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159506	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159509	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159522	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73163167	1.00[ASN][1000 genomes]
rs73163169	1.00[ASN][1000 genomes]
rs740160	1.00[ASN][1000 genomes]
rs7778859	1.00[ASN][1000 genomes]
rs868391	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98851000-98853800	Enhancers	HMEC	breast
2	chr7:98851600-98853400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:98851600-98853600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98853000-98853400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr7:98853000-98853600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:98853000-98853600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:98853200-98853400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:98853200-98853400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:98853200-98853400	Enhancers	Esophagus	oesophagus
10	chr7:98853200-98853400	Flanking Bivalent TSS/Enh	Lung	lung
11	chr7:98853200-98853400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr7:98853200-98853400	Active TSS	Osteobl	bone
13	chr7:98853200-98853600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:98853200-98853600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:98853200-98853600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:98853200-98853600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:98853200-98853600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:98853200-98853600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:98853200-98853600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:98853200-98853600	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr7:98853200-98853600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr7:98853200-98853600	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr7:98853200-98853600	Enhancers	HSMM	muscle
24	chr7:98853200-98853600	Enhancers	HSMMtube	muscle
25	chr7:98853200-98853800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

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