Variant report

Variant	rs620020
Chromosome Location	chr7:99421996-99421997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99412647..99414834-chr7:99418684..99423843,4	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10215184	1.00[ASN][1000 genomes]
rs10225908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236386	1.00[ASN][1000 genomes]
rs10245581	1.00[ASN][1000 genomes]
rs10272125	1.00[ASN][1000 genomes]
rs10273424	1.00[ASN][1000 genomes]
rs11505840	1.00[ASN][1000 genomes]
rs11505841	1.00[ASN][1000 genomes]
rs11977827	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11980179	1.00[ASN][1000 genomes]
rs11981167	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13236744	0.85[EUR][1000 genomes]
rs17161997	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1851426	0.81[YRI][hapmap]
rs2082743	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2740566	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs28371764	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28449324	1.00[ASN][1000 genomes]
rs28988579	1.00[ASN][1000 genomes]
rs34096782	1.00[ASN][1000 genomes]
rs34288759	1.00[ASN][1000 genomes]
rs34395561	1.00[ASN][1000 genomes]
rs34868357	1.00[ASN][1000 genomes]
rs34967184	1.00[ASN][1000 genomes]
rs35141942	1.00[ASN][1000 genomes]
rs35405904	1.00[ASN][1000 genomes]
rs35649099	1.00[ASN][1000 genomes]
rs36104094	1.00[ASN][1000 genomes]
rs472667	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs480596	1.00[ASN][1000 genomes]
rs487813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496000	1.00[CHB][hapmap]
rs501275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516481	1.00[ASN][1000 genomes]
rs517284	1.00[ASN][1000 genomes]
rs523407	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558002	1.00[ASN][1000 genomes]
rs558112	1.00[ASN][1000 genomes]
rs559239	1.00[ASN][1000 genomes]
rs565079	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568859	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57256111	1.00[ASN][1000 genomes]
rs57772941	1.00[ASN][1000 genomes]
rs579424	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580123	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs583353	1.00[ASN][1000 genomes]
rs585071	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599151	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613963	1.00[ASN][1000 genomes]
rs641761	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641815	0.83[EUR][1000 genomes]
rs642761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646563	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648515	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663476	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663493	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663495	1.00[ASN][1000 genomes]
rs66629054	1.00[ASN][1000 genomes]
rs667660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66953435	1.00[ASN][1000 genomes]
rs671673	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675644	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs678040	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680055	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs687134	1.00[ASN][1000 genomes]
rs688926	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694939	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957718	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6960775	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787525	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7798789	1.00[ASN][1000 genomes]
rs800666	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800667	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800673	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800674	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99419400-99432200	Enhancers	Fetal Intestine Small	intestine
2	chr7:99419600-99432000	Enhancers	Fetal Intestine Large	intestine
3	chr7:99420000-99424000	Enhancers	Adipose Nuclei	Adipose
4	chr7:99420600-99422800	Weak transcription	K562	blood
5	chr7:99420600-99424800	Enhancers	Pancreas	Pancrea
6	chr7:99420600-99425200	Enhancers	HepG2	liver
7	chr7:99420800-99422000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:99421000-99423200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:99421000-99425800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:99421000-99426400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:99421200-99423400	Enhancers	Fetal Muscle Leg	muscle
12	chr7:99421400-99422800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:99421400-99424400	Weak transcription	Stomach Mucosa	stomach
14	chr7:99421600-99422200	Flanking Active TSS	Liver	Liver
15	chr7:99421600-99423000	Enhancers	Fetal Muscle Trunk	muscle
16	chr7:99421800-99422000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:99421800-99422000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr7:99421800-99422200	Enhancers	HMEC	breast

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