Variant report
| Variant | rs10236386 |
|---|---|
| Chromosome Location | chr7:99467195-99467196 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:99465689..99467966-chr7:99515431..99519422,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CYP3A52P | TF binding region |
| ENSG00000260445 | TF binding region |
| ENSG00000146833 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:73)
| rs_ID | r2[population] |
|---|---|
| rs10215184 | 1.00[ASN][1000 genomes] |
| rs10225908 | 1.00[ASN][1000 genomes] |
| rs10245581 | 1.00[ASN][1000 genomes] |
| rs10272125 | 1.00[ASN][1000 genomes] |
| rs11505840 | 1.00[ASN][1000 genomes] |
| rs11505841 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11977827 | 1.00[ASN][1000 genomes] |
| rs11980179 | 1.00[ASN][1000 genomes] |
| rs11981167 | 1.00[ASN][1000 genomes] |
| rs17161997 | 1.00[ASN][1000 genomes] |
| rs2082743 | 1.00[ASN][1000 genomes] |
| rs28371764 | 1.00[ASN][1000 genomes] |
| rs28449324 | 1.00[ASN][1000 genomes] |
| rs28988579 | 1.00[ASN][1000 genomes] |
| rs34096782 | 1.00[ASN][1000 genomes] |
| rs34288759 | 1.00[ASN][1000 genomes] |
| rs34395561 | 1.00[ASN][1000 genomes] |
| rs34868357 | 1.00[ASN][1000 genomes] |
| rs34967184 | 1.00[ASN][1000 genomes] |
| rs35141942 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35405904 | 1.00[ASN][1000 genomes] |
| rs35649099 | 1.00[ASN][1000 genomes] |
| rs472667 | 1.00[ASN][1000 genomes] |
| rs480596 | 1.00[ASN][1000 genomes] |
| rs487813 | 1.00[ASN][1000 genomes] |
| rs501275 | 1.00[ASN][1000 genomes] |
| rs516481 | 1.00[ASN][1000 genomes] |
| rs517284 | 1.00[ASN][1000 genomes] |
| rs523407 | 1.00[ASN][1000 genomes] |
| rs528144 | 1.00[ASN][1000 genomes] |
| rs545400 | 1.00[ASN][1000 genomes] |
| rs549061 | 1.00[ASN][1000 genomes] |
| rs558002 | 1.00[ASN][1000 genomes] |
| rs558112 | 1.00[ASN][1000 genomes] |
| rs559239 | 1.00[ASN][1000 genomes] |
| rs565079 | 1.00[ASN][1000 genomes] |
| rs568859 | 1.00[ASN][1000 genomes] |
| rs57256111 | 1.00[ASN][1000 genomes] |
| rs57772941 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs579424 | 1.00[ASN][1000 genomes] |
| rs580123 | 1.00[ASN][1000 genomes] |
| rs583353 | 1.00[ASN][1000 genomes] |
| rs585071 | 1.00[ASN][1000 genomes] |
| rs599151 | 1.00[ASN][1000 genomes] |
| rs613963 | 1.00[ASN][1000 genomes] |
| rs620020 | 1.00[ASN][1000 genomes] |
| rs641761 | 1.00[ASN][1000 genomes] |
| rs642761 | 1.00[ASN][1000 genomes] |
| rs646563 | 1.00[ASN][1000 genomes] |
| rs648515 | 1.00[ASN][1000 genomes] |
| rs660629 | 1.00[ASN][1000 genomes] |
| rs663476 | 1.00[ASN][1000 genomes] |
| rs663493 | 1.00[ASN][1000 genomes] |
| rs663495 | 1.00[ASN][1000 genomes] |
| rs66629054 | 1.00[ASN][1000 genomes] |
| rs667660 | 1.00[ASN][1000 genomes] |
| rs66953435 | 1.00[ASN][1000 genomes] |
| rs671673 | 1.00[ASN][1000 genomes] |
| rs675644 | 1.00[ASN][1000 genomes] |
| rs678040 | 1.00[ASN][1000 genomes] |
| rs679320 | 1.00[ASN][1000 genomes] |
| rs680055 | 1.00[ASN][1000 genomes] |
| rs687134 | 1.00[ASN][1000 genomes] |
| rs688926 | 1.00[ASN][1000 genomes] |
| rs694924 | 1.00[ASN][1000 genomes] |
| rs694939 | 1.00[ASN][1000 genomes] |
| rs6957718 | 1.00[ASN][1000 genomes] |
| rs6960775 | 1.00[ASN][1000 genomes] |
| rs7787525 | 1.00[ASN][1000 genomes] |
| rs7798789 | 1.00[ASN][1000 genomes] |
| rs800666 | 1.00[ASN][1000 genomes] |
| rs800667 | 1.00[ASN][1000 genomes] |
| rs800673 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1829865 | chr7:99430678-99755141 | Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1131 gene(s) | inside rSNPs | diseases |
| 2 | esv1830649 | chr7:99430678-99755141 | Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1131 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:99458200-99489600 | Weak transcription | Pancreas | Pancrea |
| 2 | chr7:99465200-99475400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
