Variant report

Variant	rs642761
Chromosome Location	chr7:99435739-99435740
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99427440..99433214-chr7:99433946..99436669,7	K562	blood:
2	chr7:99434310..99436769-chr7:99443746..99446718,2	K562	blood:
3	chr7:99434310..99436769-chr7:99443746..99446761,3	K562	blood:
4	chr7:99429881..99432803-chr7:99433485..99436669,5	K562	blood:
5	chr7:99123163..99123910-chr7:99435300..99436219,3	MCF-7	breast:
6	chr7:99228963..99230026-chr7:99435320..99436119,4	MCF-7	breast:
7	chr7:99229171..99229923-chr7:99435691..99436334,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10215184	1.00[ASN][1000 genomes]
rs10225908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236386	1.00[ASN][1000 genomes]
rs10245581	1.00[ASN][1000 genomes]
rs10272125	1.00[ASN][1000 genomes]
rs10273424	1.00[ASN][1000 genomes]
rs11505840	1.00[ASN][1000 genomes]
rs11505841	1.00[ASN][1000 genomes]
rs11977827	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11980179	1.00[ASN][1000 genomes]
rs11981167	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13236744	0.85[EUR][1000 genomes]
rs17161997	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1851426	0.92[ASW][hapmap]
rs2082743	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2740566	0.93[ASW][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs28371764	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28449324	1.00[ASN][1000 genomes]
rs28988579	1.00[ASN][1000 genomes]
rs34096782	1.00[ASN][1000 genomes]
rs34288759	1.00[ASN][1000 genomes]
rs34395561	1.00[ASN][1000 genomes]
rs34868357	1.00[ASN][1000 genomes]
rs34967184	1.00[ASN][1000 genomes]
rs35141942	1.00[ASN][1000 genomes]
rs35405904	1.00[ASN][1000 genomes]
rs35649099	1.00[ASN][1000 genomes]
rs472667	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs480596	1.00[ASN][1000 genomes]
rs487813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496000	1.00[CHB][hapmap];0.92[GIH][hapmap]
rs501275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516481	1.00[ASN][1000 genomes]
rs517284	1.00[ASN][1000 genomes]
rs523407	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558002	1.00[ASN][1000 genomes]
rs558112	1.00[ASN][1000 genomes]
rs559239	1.00[ASN][1000 genomes]
rs565079	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568859	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57256111	1.00[ASN][1000 genomes]
rs57772941	1.00[ASN][1000 genomes]
rs579424	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580123	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs583353	1.00[ASN][1000 genomes]
rs585071	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599151	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613963	1.00[ASN][1000 genomes]
rs620020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641761	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641815	0.83[EUR][1000 genomes]
rs646563	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648515	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663476	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663493	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663495	1.00[ASN][1000 genomes]
rs66629054	1.00[ASN][1000 genomes]
rs667660	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66953435	1.00[ASN][1000 genomes]
rs671673	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675644	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs678040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680055	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs687134	1.00[ASN][1000 genomes]
rs688926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694939	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957718	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6960775	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787525	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7798789	1.00[ASN][1000 genomes]
rs800666	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800673	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800674	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99422800-99437400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:99433800-99465000	Strong transcription	Liver	Liver
3	chr7:99434000-99436400	Enhancers	K562	blood
4	chr7:99434400-99436000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:99435000-99435800	Enhancers	Stomach Mucosa	stomach
6	chr7:99435000-99436800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:99435000-99438000	Enhancers	Fetal Intestine Large	intestine
8	chr7:99435200-99435800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:99435200-99435800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr7:99435200-99436000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:99435200-99436000	Enhancers	Fetal Intestine Small	intestine
12	chr7:99435200-99436000	Enhancers	HepG2	liver
13	chr7:99435200-99436600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:99435400-99435800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr7:99435400-99435800	Flanking Active TSS	Dnd41	blood
16	chr7:99435400-99436000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:99435400-99436000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr7:99435400-99436000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:99435400-99436000	Enhancers	GM12878-XiMat	blood
20	chr7:99435400-99436200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr7:99435400-99436600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:99435600-99435800	Enhancers	HMEC	breast
23	chr7:99435600-99436600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:99435600-99436600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:99435600-99436600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:99435600-99436600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:99435600-99436800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr7:99435600-99441800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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