Variant report

Variant	rs800674
Chromosome Location	chr7:99434857-99434858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10225908	0.85[EUR][1000 genomes]
rs472667	0.85[EUR][1000 genomes]
rs487813	0.85[EUR][1000 genomes]
rs501275	0.85[EUR][1000 genomes]
rs523407	0.83[EUR][1000 genomes]
rs528144	0.85[EUR][1000 genomes]
rs545400	0.85[EUR][1000 genomes]
rs549061	0.85[EUR][1000 genomes]
rs565079	0.85[EUR][1000 genomes]
rs568859	0.85[EUR][1000 genomes]
rs579424	0.85[EUR][1000 genomes]
rs585071	0.83[EUR][1000 genomes]
rs599151	0.85[EUR][1000 genomes]
rs620020	0.83[EUR][1000 genomes]
rs641761	0.85[EUR][1000 genomes]
rs642761	0.83[EUR][1000 genomes]
rs646563	0.85[EUR][1000 genomes]
rs660629	0.85[EUR][1000 genomes]
rs667660	0.81[EUR][1000 genomes]
rs671673	0.85[EUR][1000 genomes]
rs678040	0.85[EUR][1000 genomes]
rs679320	0.85[EUR][1000 genomes]
rs688926	0.83[EUR][1000 genomes]
rs694924	0.85[EUR][1000 genomes]
rs694939	0.85[EUR][1000 genomes]
rs6960775	0.85[EUR][1000 genomes]
rs800666	0.85[EUR][1000 genomes]
rs800667	0.85[EUR][1000 genomes]
rs800673	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs800674	C7orf43	cis	brain	BrainEAC

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99422800-99437400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:99427600-99435400	Weak transcription	Adipose Nuclei	Adipose
3	chr7:99428800-99435000	Weak transcription	Stomach Mucosa	stomach
4	chr7:99429600-99435000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:99429800-99435200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:99431800-99435400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:99431800-99435400	Weak transcription	Pancreas	Pancrea
8	chr7:99432000-99435000	Weak transcription	Fetal Intestine Large	intestine
9	chr7:99432600-99435000	Weak transcription	Dnd41	blood
10	chr7:99432600-99435200	Weak transcription	HepG2	liver
11	chr7:99433800-99465000	Strong transcription	Liver	Liver
12	chr7:99434000-99436400	Enhancers	K562	blood
13	chr7:99434400-99436000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr7:99434800-99435000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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