Variant report

Variant	rs1851426
Chromosome Location	chr7:99382936-99382937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1036374	0.91[EUR][1000 genomes]
rs17161937	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2023548	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2103030	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2461610	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2687103	0.92[GIH][hapmap]
rs2687105	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2687116	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2738262	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2740566	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2740574	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28988583	0.86[EUR][1000 genomes]
rs4281055	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs585071	0.92[ASW][hapmap];0.86[YRI][hapmap]
rs620020	0.81[YRI][hapmap]
rs642761	0.92[ASW][hapmap]
rs667660	0.92[ASW][hapmap];0.84[LWK][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs73393660	0.91[EUR][1000 genomes]
rs892753	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3450108	chr7:99339737-99383419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv970558	chr7:99358519-99389907	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99379800-99387000	Enhancers	Fetal Intestine Small	intestine
2	chr7:99380600-99384400	Weak transcription	HepG2	liver
3	chr7:99381800-99383200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr7:99381800-99384000	Enhancers	Pancreas	Pancrea
5	chr7:99381800-99385200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:99382000-99386000	Weak transcription	Psoas Muscle	Psoas
7	chr7:99382400-99383000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr7:99382400-99386200	Enhancers	Duodenum Mucosa	Duodenum
9	chr7:99382600-99383600	Weak transcription	Fetal Intestine Large	intestine
10	chr7:99382600-99384200	Enhancers	Esophagus	oesophagus
11	chr7:99382800-99386400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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