Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99415648..99420194-chr7:99515880..99518686,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146833	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1036374	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11734	1.00[TSI][hapmap]
rs12535293	1.00[GIH][hapmap]
rs12535919	1.00[GIH][hapmap]
rs17161937	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161971	1.00[GIH][hapmap]
rs17161974	1.00[GIH][hapmap]
rs17161981	1.00[GIH][hapmap]
rs17161983	1.00[GIH][hapmap]
rs1851426	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2103030	0.91[EUR][1000 genomes]
rs2461610	0.91[EUR][1000 genomes]
rs2687105	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2687116	0.87[EUR][1000 genomes]
rs2738262	0.91[EUR][1000 genomes]
rs2740566	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[EUR][1000 genomes]
rs2740574	0.91[EUR][1000 genomes]
rs28988583	0.95[EUR][1000 genomes]
rs4281055	0.87[EUR][1000 genomes]
rs6956305	1.00[TSI][hapmap]
rs6976017	1.00[TSI][hapmap]
rs73393660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs892753	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv970418	chr7:99413271-99420442	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99415600-99417400	Weak transcription	HepG2	liver
2	chr7:99416600-99420000	Weak transcription	Adipose Nuclei	Adipose

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