Variant report

Variant	rs12535293
Chromosome Location	chr7:99455104-99455105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99448316..99450710-chr7:99454335..99456999,2	MCF-7	breast:
2	chr7:99445680..99447268-chr7:99453478..99456272,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10274894	1.00[MEX][hapmap]
rs11761263	1.00[EUR][1000 genomes]
rs12530558	0.88[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12534307	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535362	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535919	1.00[GIH][hapmap]
rs12538842	1.00[EUR][1000 genomes]
rs17161937	1.00[GIH][hapmap]
rs17161967	0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161968	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161971	0.87[ASW][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161974	0.87[ASW][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161977	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161981	0.81[ASW][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161983	1.00[GIH][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs2023548	1.00[GIH][hapmap]
rs2082747	1.00[EUR][1000 genomes]
rs2740566	1.00[GIH][hapmap]
rs36199090	1.00[EUR][1000 genomes]
rs45457898	1.00[EUR][1000 genomes]
rs45480398	1.00[EUR][1000 genomes]
rs45480594	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45503294	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45563540	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45565841	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45595440	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57619271	1.00[EUR][1000 genomes]
rs60737583	1.00[EUR][1000 genomes]
rs6954903	1.00[EUR][1000 genomes]
rs73395622	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401858	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401863	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73401870	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73403507	1.00[EUR][1000 genomes]
rs73403577	1.00[EUR][1000 genomes]
rs73403584	1.00[EUR][1000 genomes]
rs7811022	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99433800-99465000	Strong transcription	Liver	Liver
2	chr7:99446200-99457600	Weak transcription	Pancreas	Pancrea
3	chr7:99454800-99456600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:99455000-99456400	Weak transcription	HepG2	liver

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