Variant report

Variant	rs17161977
Chromosome Location	chr7:99458114-99458115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99451551..99454179-chr7:99455617..99458260,2	MCF-7	breast:
2	chr7:99438226..99440315-chr7:99455557..99458209,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000021461	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11761263	1.00[EUR][1000 genomes]
rs12530558	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12534307	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535293	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12538842	1.00[EUR][1000 genomes]
rs17161967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161981	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161983	1.00[EUR][1000 genomes]
rs2082747	1.00[EUR][1000 genomes]
rs36199090	1.00[EUR][1000 genomes]
rs45457898	1.00[EUR][1000 genomes]
rs45480398	1.00[EUR][1000 genomes]
rs45480594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45503294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45563540	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45565841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45595440	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57619271	1.00[EUR][1000 genomes]
rs60737583	1.00[EUR][1000 genomes]
rs6954903	1.00[EUR][1000 genomes]
rs73395622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401863	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73401870	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403507	1.00[EUR][1000 genomes]
rs73403577	1.00[EUR][1000 genomes]
rs73403584	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99433800-99465000	Strong transcription	Liver	Liver
2	chr7:99456600-99460600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:99457000-99458200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:99457200-99458400	Enhancers	HSMMtube	muscle
5	chr7:99457200-99458600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:99457200-99458800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:99457200-99458800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr7:99457200-99459000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:99457200-99459000	Enhancers	NH-A	brain
10	chr7:99457400-99458200	Flanking Active TSS	HepG2	liver
11	chr7:99457400-99458200	Flanking Active TSS	HMEC	breast
12	chr7:99457400-99458400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr7:99457400-99458600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:99457400-99458800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:99457400-99459000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:99457400-99459000	Enhancers	HSMM	muscle
17	chr7:99457400-99459200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:99457400-99459400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:99457600-99458200	Enhancers	Fetal Intestine Small	intestine
20	chr7:99457600-99458200	Enhancers	Pancreas	Pancrea
21	chr7:99457600-99458600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:99457600-99458800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:99457800-99458200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:99457800-99458200	Active TSS	Osteobl	bone
25	chr7:99457800-99458600	Enhancers	Placenta	Placenta
26	chr7:99457800-99458800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:99458000-99458200	Enhancers	Duodenum Mucosa	Duodenum
28	chr7:99458000-99458400	Enhancers	Fetal Muscle Leg	muscle
29	chr7:99458000-99458400	Flanking Active TSS	NHEK	skin
30	chr7:99458000-99458600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr7:99458000-99458600	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links