Variant report

Variant	rs45480398
Chromosome Location	chr7:99435540-99435541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99427440..99433214-chr7:99433946..99436669,7	K562	blood:
2	chr7:99434310..99436769-chr7:99443746..99446718,2	K562	blood:
3	chr7:99434310..99436769-chr7:99443746..99446761,3	K562	blood:
4	chr7:99429881..99432803-chr7:99433485..99436669,5	K562	blood:
5	chr7:99123163..99123910-chr7:99435300..99436219,3	MCF-7	breast:
6	chr7:99228963..99230026-chr7:99435320..99436119,4	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12530558	1.00[EUR][1000 genomes]
rs12534307	1.00[EUR][1000 genomes]
rs12535293	1.00[EUR][1000 genomes]
rs12535362	1.00[EUR][1000 genomes]
rs12538842	1.00[EUR][1000 genomes]
rs17161967	1.00[EUR][1000 genomes]
rs17161968	1.00[EUR][1000 genomes]
rs17161971	1.00[EUR][1000 genomes]
rs17161974	1.00[EUR][1000 genomes]
rs17161977	1.00[EUR][1000 genomes]
rs17161981	1.00[EUR][1000 genomes]
rs17161983	1.00[EUR][1000 genomes]
rs2082747	1.00[EUR][1000 genomes]
rs36199090	1.00[EUR][1000 genomes]
rs45457898	1.00[EUR][1000 genomes]
rs45480594	1.00[EUR][1000 genomes]
rs45503294	1.00[EUR][1000 genomes]
rs45563540	1.00[EUR][1000 genomes]
rs45565841	1.00[EUR][1000 genomes]
rs45595440	1.00[EUR][1000 genomes]
rs57619271	1.00[EUR][1000 genomes]
rs60737583	1.00[EUR][1000 genomes]
rs6954903	1.00[EUR][1000 genomes]
rs73395622	1.00[EUR][1000 genomes]
rs73401858	1.00[EUR][1000 genomes]
rs73401870	1.00[EUR][1000 genomes]
rs73403507	1.00[EUR][1000 genomes]
rs73403577	1.00[EUR][1000 genomes]
rs73403584	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99422800-99437400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:99433800-99465000	Strong transcription	Liver	Liver
3	chr7:99434000-99436400	Enhancers	K562	blood
4	chr7:99434400-99436000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:99435000-99435600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:99435000-99435600	Enhancers	Duodenum Mucosa	Duodenum
7	chr7:99435000-99435600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr7:99435000-99435800	Enhancers	Stomach Mucosa	stomach
9	chr7:99435000-99436800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:99435000-99438000	Enhancers	Fetal Intestine Large	intestine
11	chr7:99435200-99435600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:99435200-99435800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:99435200-99435800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr7:99435200-99436000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:99435200-99436000	Enhancers	Fetal Intestine Small	intestine
16	chr7:99435200-99436000	Enhancers	HepG2	liver
17	chr7:99435200-99436600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:99435400-99435600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:99435400-99435600	Enhancers	Adipose Nuclei	Adipose
20	chr7:99435400-99435600	Enhancers	Pancreas	Pancrea
21	chr7:99435400-99435800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr7:99435400-99435800	Flanking Active TSS	Dnd41	blood
23	chr7:99435400-99436000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:99435400-99436000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr7:99435400-99436000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:99435400-99436000	Enhancers	GM12878-XiMat	blood
27	chr7:99435400-99436200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr7:99435400-99436600	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links