Variant report

Variant	rs73403584
Chromosome Location	chr7:99475198-99475199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:99475085-99475285	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:37196801..37197670-chr7:99474858..99475858,2	K562	blood:

Variant related genes	Relation type
OR2AE1	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11761263	1.00[EUR][1000 genomes]
rs12530558	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12534307	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535293	1.00[EUR][1000 genomes]
rs12535362	1.00[EUR][1000 genomes]
rs12538842	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161967	1.00[EUR][1000 genomes]
rs17161968	1.00[EUR][1000 genomes]
rs17161971	1.00[EUR][1000 genomes]
rs17161974	1.00[EUR][1000 genomes]
rs17161977	1.00[EUR][1000 genomes]
rs17161981	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2082746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2082747	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36199090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45457898	1.00[EUR][1000 genomes]
rs45480398	1.00[EUR][1000 genomes]
rs45480594	1.00[EUR][1000 genomes]
rs45503294	1.00[EUR][1000 genomes]
rs45563540	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45565841	1.00[EUR][1000 genomes]
rs45595440	1.00[EUR][1000 genomes]
rs57619271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60737583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6954903	1.00[EUR][1000 genomes]
rs73395622	1.00[EUR][1000 genomes]
rs73401858	1.00[EUR][1000 genomes]
rs73401870	1.00[EUR][1000 genomes]
rs73403507	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv1792388	chr7:99468155-99497338	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv966726	chr7:99473527-99488698	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99458200-99489600	Weak transcription	Pancreas	Pancrea
2	chr7:99465200-99475400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:99468400-99487200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:99470000-99489600	Weak transcription	Gastric	stomach
5	chr7:99470400-99486800	Weak transcription	Primary T cells from cord blood	blood
6	chr7:99470400-99487000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:99471400-99487000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:99472400-99487200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:99472400-99487400	Weak transcription	Aorta	Aorta
10	chr7:99472600-99487000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:99472600-99487200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:99472600-99487600	Weak transcription	Lung	lung
13	chr7:99472600-99488800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:99472800-99476200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:99473000-99487200	Weak transcription	Brain Substantia Nigra	brain
16	chr7:99473200-99487200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:99474000-99475400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:99474600-99487000	Weak transcription	Adipose Nuclei	Adipose
19	chr7:99474800-99487000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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