Variant report
| Variant | rs45457898 |
|---|---|
| Chromosome Location | chr7:99453016-99453017 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | HNF4G | chr7:99452928-99453176 | HepG2 | liver: | n/a | chr7:99453049-99453064 chr7:99453072-99453087 |
| 2 | HNF4A | chr7:99452948-99453155 | HepG2 | liver: | n/a | chr7:99453073-99453088 chr7:99453050-99453065 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CYP3A43 | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11761263 | 1.00[EUR][1000 genomes] |
| rs12530558 | 1.00[EUR][1000 genomes] |
| rs12534307 | 1.00[EUR][1000 genomes] |
| rs12535293 | 1.00[EUR][1000 genomes] |
| rs12535362 | 1.00[EUR][1000 genomes] |
| rs12538842 | 1.00[EUR][1000 genomes] |
| rs17161967 | 1.00[EUR][1000 genomes] |
| rs17161968 | 1.00[EUR][1000 genomes] |
| rs17161971 | 1.00[EUR][1000 genomes] |
| rs17161974 | 1.00[EUR][1000 genomes] |
| rs17161977 | 1.00[EUR][1000 genomes] |
| rs17161981 | 1.00[EUR][1000 genomes] |
| rs17161983 | 1.00[EUR][1000 genomes] |
| rs2082747 | 1.00[EUR][1000 genomes] |
| rs36199090 | 1.00[EUR][1000 genomes] |
| rs45480398 | 1.00[EUR][1000 genomes] |
| rs45480594 | 1.00[EUR][1000 genomes] |
| rs45503294 | 1.00[EUR][1000 genomes] |
| rs45563540 | 1.00[EUR][1000 genomes] |
| rs45565841 | 1.00[EUR][1000 genomes] |
| rs45595440 | 1.00[EUR][1000 genomes] |
| rs57619271 | 1.00[EUR][1000 genomes] |
| rs60737583 | 1.00[EUR][1000 genomes] |
| rs6954903 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73395622 | 1.00[EUR][1000 genomes] |
| rs73401858 | 1.00[EUR][1000 genomes] |
| rs73401870 | 1.00[EUR][1000 genomes] |
| rs73403507 | 1.00[EUR][1000 genomes] |
| rs73403577 | 1.00[EUR][1000 genomes] |
| rs73403584 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1829865 | chr7:99430678-99755141 | Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1131 gene(s) | inside rSNPs | diseases |
| 2 | esv1830649 | chr7:99430678-99755141 | Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1131 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:99433800-99465000 | Strong transcription | Liver | Liver |
| 2 | chr7:99446200-99457600 | Weak transcription | Pancreas | Pancrea |
| 3 | chr7:99452800-99455000 | Enhancers | HepG2 | liver |
