Variant report

Variant	rs17161983
Chromosome Location	chr7:99463818-99463819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99461799..99464694-chr7:99500550..99502670,2	MCF-7	breast:
2	chr7:99274186..99277418-chr7:99462758..99465304,3	K562	blood:
3	chr7:99462714..99465600-chr7:99478263..99479767,2	K562	blood:

Variant related genes	Relation type
ENSG00000106258	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11761263	1.00[EUR][1000 genomes]
rs12530558	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12534307	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535293	1.00[GIH][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs12535362	1.00[EUR][1000 genomes]
rs12535919	1.00[GIH][hapmap]
rs12538842	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161937	1.00[GIH][hapmap]
rs17161967	0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs17161968	1.00[EUR][1000 genomes]
rs17161971	1.00[GIH][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs17161974	1.00[GIH][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs17161977	1.00[EUR][1000 genomes]
rs17161981	0.86[ASW][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2023548	1.00[GIH][hapmap]
rs2082746	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2082747	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2740566	1.00[GIH][hapmap]
rs36199090	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45457898	1.00[EUR][1000 genomes]
rs45480398	1.00[EUR][1000 genomes]
rs45480594	1.00[EUR][1000 genomes]
rs45503294	1.00[EUR][1000 genomes]
rs45563540	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45565841	1.00[EUR][1000 genomes]
rs45595440	1.00[EUR][1000 genomes]
rs57619271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60737583	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6954903	1.00[EUR][1000 genomes]
rs73395622	1.00[EUR][1000 genomes]
rs73401858	1.00[EUR][1000 genomes]
rs73401870	1.00[EUR][1000 genomes]
rs73403507	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403584	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv3476466	chr7:99459416-99464314	Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3508513	chr7:99460216-99464714	Bivalent Enhancer Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3508511	chr7:99460666-99464064	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3436631	chr7:99460916-99465214	Bivalent Enhancer Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3508516	chr7:99461322-99464005	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1812457	chr7:99461483-99463818	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1809167	chr7:99461694-99463818	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99433800-99465000	Strong transcription	Liver	Liver
2	chr7:99458200-99489600	Weak transcription	Pancreas	Pancrea

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