Variant report

Variant	rs73401863
Chromosome Location	chr7:99456460-99456461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12530558	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12534307	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12535293	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12535362	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17161967	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17161968	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17161971	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17161974	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17161977	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17161981	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs45480594	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs45503294	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs45563540	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs45565841	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs45595440	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73395622	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73401858	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73401870	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99433800-99465000	Strong transcription	Liver	Liver
2	chr7:99446200-99457600	Weak transcription	Pancreas	Pancrea
3	chr7:99454800-99456600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:99456400-99457400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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