Variant report

Variant	rs10274894
Chromosome Location	chr7:99632832-99632833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99600154..99603008-chr7:99631964..99633761,2	MCF-7	breast:
2	chr7:99631794..99640933-chr7:99644912..99651639,12	K562	blood:
3	chr7:99626508..99630728-chr7:99630857..99634217,6	MCF-7	breast:
4	chr7:99631116..99632958-chr7:99644349..99647054,2	MCF-7	breast:
5	chr7:99619042..99622957-chr7:99630011..99632854,4	MCF-7	breast:
6	chr7:99627608..99629341-chr7:99632124..99633750,2	K562	blood:
7	chr7:99612911..99615256-chr7:99631449..99635300,4	MCF-7	breast:
8	chr7:99611578..99613517-chr7:99631513..99633210,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166529	Chromatin interaction
ENSG00000106261	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12535293	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases
4	esv1828033	chr7:99566252-99634770	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	esv1827496	chr7:99566264-99634782	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv469687	chr7:99572543-99755141	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1115 gene(s)	inside rSNPs	diseases
7	nsv482601	chr7:99572543-99755141	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1115 gene(s)	inside rSNPs	diseases
8	esv1824630	chr7:99614770-99639445	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99614200-99639000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99615200-99636400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:99615200-99637800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:99615400-99639600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:99616400-99636200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:99618800-99636400	Strong transcription	Dnd41	blood
7	chr7:99619000-99636000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr7:99619200-99636200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:99619200-99636200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:99619200-99636400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:99619200-99636400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:99619200-99636800	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:99619400-99634000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:99619400-99635200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:99619400-99635200	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:99619400-99635600	Strong transcription	Thymus	Thymus
17	chr7:99619400-99636200	Strong transcription	Fetal Brain Female	brain
18	chr7:99619400-99636400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:99619400-99637200	Strong transcription	Brain Germinal Matrix	brain
20	chr7:99619600-99636200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:99619800-99634400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:99619800-99636200	Strong transcription	Brain Hippocampus Middle	brain
23	chr7:99620000-99636200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:99620000-99636400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr7:99620000-99636400	Strong transcription	Stomach Smooth Muscle	stomach
26	chr7:99620200-99633800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:99620200-99635000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr7:99620400-99634200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:99620600-99634400	Strong transcription	Brain Cingulate Gyrus	brain
30	chr7:99620600-99636400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:99620800-99634000	Strong transcription	Left Ventricle	heart
32	chr7:99621000-99633000	Strong transcription	Rectal Smooth Muscle	rectum
33	chr7:99621000-99633800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr7:99621200-99633400	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr7:99621400-99633200	Strong transcription	Duodenum Mucosa	Duodenum
36	chr7:99621400-99636600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:99621600-99633600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr7:99622000-99633000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr7:99622200-99633800	Strong transcription	Fetal Intestine Large	intestine
40	chr7:99623200-99636000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:99623600-99633600	Strong transcription	Lung	lung
42	chr7:99624400-99633800	Strong transcription	Brain Angular Gyrus	brain
43	chr7:99624400-99635200	Strong transcription	Primary hematopoietic stem cells	blood
44	chr7:99624600-99633600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr7:99624800-99633600	Strong transcription	Fetal Kidney	kidney
46	chr7:99624800-99635200	Strong transcription	K562	blood
47	chr7:99625400-99634000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:99626600-99636400	Strong transcription	Fetal Thymus	thymus
49	chr7:99626800-99633600	Strong transcription	Spleen	Spleen
50	chr7:99626800-99636200	Strong transcription	Primary T cells from cord blood	blood

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