Variant report

Variant	rs73393660
Chromosome Location	chr7:99431177-99431178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1036374	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161937	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1851426	0.91[EUR][1000 genomes]
rs2023548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2103030	0.91[EUR][1000 genomes]
rs2461610	0.91[EUR][1000 genomes]
rs2687105	0.81[EUR][1000 genomes]
rs2687116	0.87[EUR][1000 genomes]
rs2738262	0.91[EUR][1000 genomes]
rs2740566	0.91[EUR][1000 genomes]
rs2740574	0.91[EUR][1000 genomes]
rs28988583	0.95[EUR][1000 genomes]
rs4281055	0.87[EUR][1000 genomes]
rs892753	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99419400-99432200	Enhancers	Fetal Intestine Small	intestine
2	chr7:99419600-99432000	Enhancers	Fetal Intestine Large	intestine
3	chr7:99422800-99437400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:99427600-99432600	Enhancers	HepG2	liver
5	chr7:99427600-99435400	Weak transcription	Adipose Nuclei	Adipose
6	chr7:99427800-99431800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:99428600-99432800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:99428800-99435000	Weak transcription	Stomach Mucosa	stomach
9	chr7:99429600-99431800	Enhancers	Liver	Liver
10	chr7:99429600-99435000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:99429800-99435200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:99430000-99431200	Weak transcription	Pancreas	Pancrea
13	chr7:99430400-99431800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:99430400-99431800	Flanking Active TSS	K562	blood
15	chr7:99430400-99432600	Enhancers	Dnd41	blood
16	chr7:99430800-99431600	Enhancers	Placenta	Placenta
17	chr7:99430800-99431800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:99431000-99431400	Active TSS	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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