Variant report

Variant	rs892753
Chromosome Location	chr7:99437269-99437270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99432826..99435527-chr7:99436007..99438743,2	K562	blood:
2	chr7:99436167..99437949-chr7:99514061..99515612,2	MCF-7	breast:
3	chr7:99036409..99038760-chr7:99436644..99439361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160917	Chromatin interaction
ENSG00000106246	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1036374	0.90[EUR][1000 genomes]
rs17161937	0.90[EUR][1000 genomes]
rs1851426	0.91[EUR][1000 genomes]
rs2023548	0.90[EUR][1000 genomes]
rs2103030	0.91[EUR][1000 genomes]
rs2461610	0.91[EUR][1000 genomes]
rs2687105	0.81[EUR][1000 genomes]
rs2687116	0.87[EUR][1000 genomes]
rs2738262	0.91[EUR][1000 genomes]
rs2740566	0.91[EUR][1000 genomes]
rs2740574	0.91[EUR][1000 genomes]
rs28988583	0.95[EUR][1000 genomes]
rs4281055	0.87[EUR][1000 genomes]
rs73393660	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99422800-99437400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:99433800-99465000	Strong transcription	Liver	Liver
3	chr7:99435000-99438000	Enhancers	Fetal Intestine Large	intestine
4	chr7:99435600-99441800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:99436000-99438400	Weak transcription	GM12878-XiMat	blood
6	chr7:99436000-99438600	Weak transcription	HepG2	liver
7	chr7:99436000-99441000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:99436000-99441000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:99436200-99438200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:99436400-99437600	Weak transcription	Stomach Mucosa	stomach
11	chr7:99436600-99437400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr7:99436600-99438200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:99436600-99438800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:99436600-99441000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:99436600-99441000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:99436800-99437800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr7:99436800-99438800	Enhancers	K562	blood
18	chr7:99436800-99440800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:99437000-99437400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:99437000-99437400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:99437000-99437400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:99437000-99437400	Enhancers	Colonic Mucosa	Colon
23	chr7:99437000-99437800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr7:99437000-99437800	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr7:99437000-99438200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:99437000-99438200	Enhancers	NHEK	skin
27	chr7:99437000-99438400	Enhancers	Fetal Intestine Small	intestine
28	chr7:99437000-99439000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:99437200-99437600	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr7:99437200-99437600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:99437200-99437800	Enhancers	HMEC	breast

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