Variant report

Variant	nsv981679
Chromosome Location	chr7:128278778-128282292
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM71F2-1	chr7:128278998-128280471	NONHSAT123216
2	lnc-FAM71F2-1	chr7:128278644-128281373	NONHSAT123217
3	lnc-FAM71F2-1	chr7:128278828-128281168	XLOC_006242
4	lnc-FAM71F2-1	chr7:128280776-128281433	NONHSAT123218
5	lnc-FAM71F2-1	chr7:128281901-128282358	NONHSAT123217
6	lnc-FAM71F2-1	chr7:128282271-128282639	NONHSAT123219
7	lnc-FAM71F2-1	chr7:128282271-128282335	NONHSAT123218
8	lnc-FAM71F2-1	chr7:128280784-128281433	NONHSAT123219
9	lnc-FAM71F2-1	chr7:128281386-128281433	NONHSAT123221
10	lnc-FAM71F2-1	chr7:128282271-128282330	NONHSAT123221

No data

Variant related genes	Relation type
KIF26A	miRNA target sites

Extended variants
information (count: 129 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:129 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192994640	chr7:128278787-128278788	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs566134009	chr7:128278839-128278840	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs3993507	chr7:128278872-128278873	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs563349103	chr7:128278873-128278874	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs3993508	chr7:128278875-128278876	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs3993509	chr7:128278886-128278887	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs3993511	chr7:128278913-128278914	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs530432799	chr7:128278919-128278920	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs372759229	chr7:128278961-128278962	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs552188828	chr7:128278988-128278989	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs3993513	chr7:128278991-128278992	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs570347634	chr7:128279046-128279047	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs9801680	chr7:128279078-128279079	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs180878685	chr7:128279088-128279089	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs568683172	chr7:128279097-128279098	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs183513573	chr7:128279111-128279112	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs3993515	chr7:128279133-128279134	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs3993516	chr7:128279135-128279136	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs557186393	chr7:128279171-128279172	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs569375699	chr7:128279191-128279192	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs375340198	chr7:128279201-128279202	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs539549245	chr7:128279216-128279217	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs558161615	chr7:128279237-128279238	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs572887652	chr7:128279263-128279264	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs529388206	chr7:128279269-128279270	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs552820342	chr7:128279289-128279290	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs62481901	chr7:128279389-128279390	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs190730172	chr7:128279429-128279430	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs563328232	chr7:128279493-128279494	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs530676065	chr7:128279590-128279591	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs545557295	chr7:128279666-128279667	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs35260045	chr7:128279726-128279727	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs564140406	chr7:128279760-128279761	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs534989425	chr7:128279774-128279775	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs62481902	chr7:128279848-128279849	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs547323320	chr7:128279849-128279850	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs568732464	chr7:128279924-128279925	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs529605816	chr7:128279926-128279927	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs138907268	chr7:128279955-128279956	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs569332419	chr7:128280000-128280001	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs539958288	chr7:128280010-128280011	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs557937296	chr7:128280021-128280022	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs566549354	chr7:128280025-128280026	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs182019797	chr7:128280034-128280035	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs9769753	chr7:128280035-128280036	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs62481903	chr7:128280069-128280070	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs535382105	chr7:128280071-128280072	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs200522809	chr7:128280100-128280101	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs557145851	chr7:128280215-128280216	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs575328713	chr7:128280228-128280229	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Biliary cancer	19435499	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Melanoma	19188590	CNVD
Hepatocellular carcinoma	16785998	CNVD
Glioblastoma multiforme	18628472	CNVD
Basal cell lymphoma	21115979	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	17217626	CNVD
Coffin-Siris syndrome	21572526	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Retinitis pigmentosa	17160897	CNVD
Colorblindness	17160897	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	21509527	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:194 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128237800-128290400	Weak transcription	HepG2	liver
2	chr7:128239200-128287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:128239200-128296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:128242600-128292800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:128246600-128284800	Weak transcription	Stomach Mucosa	stomach
6	chr7:128249600-128283200	Weak transcription	Hela-S3	cervix
7	chr7:128249600-128285800	Weak transcription	Fetal Heart	heart
8	chr7:128249600-128286800	Weak transcription	HSMMtube	muscle
9	chr7:128249600-128289000	Weak transcription	NHEK	skin
10	chr7:128249600-128293400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:128249600-128295200	Weak transcription	NH-A	brain
12	chr7:128249600-128297600	Weak transcription	HUVEC	blood vessel
13	chr7:128249600-128308400	Weak transcription	HSMM	muscle
14	chr7:128249600-128312200	Weak transcription	Psoas Muscle	Psoas
15	chr7:128249600-128319600	Weak transcription	NHLF	lung
16	chr7:128252200-128287600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:128256800-128288600	Weak transcription	Osteobl	bone
18	chr7:128258600-128287400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:128260000-128296400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr7:128260400-128300600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:128262200-128293200	Weak transcription	Brain Germinal Matrix	brain
22	chr7:128262600-128283800	Weak transcription	Small Intestine	intestine
23	chr7:128262800-128278800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:128263000-128286600	Weak transcription	Fetal Brain Male	brain
25	chr7:128265800-128289000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:128266400-128290400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:128267200-128287400	Strong transcription	Fetal Muscle Leg	muscle
28	chr7:128268000-128278800	Weak transcription	Primary T cells from cord blood	blood
29	chr7:128269800-128279400	Weak transcription	Primary B cells from cord blood	blood
30	chr7:128272200-128300000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:128272400-128278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:128272400-128279200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:128272400-128279400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:128272400-128285800	Weak transcription	Fetal Kidney	kidney
35	chr7:128272400-128290400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:128272400-128290400	Weak transcription	K562	blood
37	chr7:128272400-128292400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:128272400-128293200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr7:128273000-128278800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr7:128273600-128278800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:128273600-128279400	Weak transcription	Brain Substantia Nigra	brain
42	chr7:128273600-128290600	Weak transcription	Fetal Brain Female	brain
43	chr7:128273800-128278800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr7:128273800-128278800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:128273800-128278800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:128273800-128278800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr7:128273800-128283600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:128273800-128291800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr7:128274200-128278800	Weak transcription	Primary B cells from peripheral blood	blood
50	chr7:128274200-128280000	Weak transcription	Fetal Lung	lung

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