Variant report

Variant	nsv982204
Chromosome Location	chr9:26878626-26880449
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26873222..26876012-chr9:26876055..26878747,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLAA-2	chr9:26880176-26880547	NONHSAT130599

Extended variants
information (count: 96 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:96 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186401992	chr9:26878644-26878645	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs375564414	chr9:26878650-26878651	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs568227449	chr9:26878676-26878677	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs113245208	chr9:26878687-26878688	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs548354162	chr9:26878706-26878707	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs559659947	chr9:26878747-26878748	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs533346189	chr9:26878812-26878813	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs566581977	chr9:26878840-26878841	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs534070942	chr9:26878852-26878853	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs558912227	chr9:26878856-26878857	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs369315751	chr9:26878861-26878862	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs570426839	chr9:26878869-26878870	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs537849349	chr9:26878898-26878899	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs556247042	chr9:26878911-26878912	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs188061591	chr9:26878912-26878913	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs541601633	chr9:26878928-26878929	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs181066652	chr9:26878935-26878936	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs572581231	chr9:26878955-26878956	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs186464554	chr9:26878977-26878978	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs377382820	chr9:26878989-26878990	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs542301187	chr9:26879028-26879029	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs564458068	chr9:26879035-26879036	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs563674240	chr9:26879058-26879059	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs543417848	chr9:26879068-26879069	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs191009163	chr9:26879105-26879106	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs181373174	chr9:26879108-26879109	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs112157348	chr9:26879206-26879207	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs560265365	chr9:26879226-26879227	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs112928642	chr9:26879228-26879229	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs11789709	chr9:26879241-26879242	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs552459396	chr9:26879271-26879272	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs562720523	chr9:26879281-26879282	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs554575981	chr9:26879311-26879312	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs377699949	chr9:26879322-26879323	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs144485510	chr9:26879373-26879374	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs549794091	chr9:26879379-26879380	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs62544410	chr9:26879405-26879406	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs148412803	chr9:26879419-26879420	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs185976271	chr9:26879422-26879423	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs553608813	chr9:26879439-26879440	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs530923862	chr9:26879506-26879507	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs190704909	chr9:26879507-26879508	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs539656867	chr9:26879512-26879513	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs557986668	chr9:26879527-26879528	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs576316869	chr9:26879534-26879535	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs549846228	chr9:26879569-26879570	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs543738980	chr9:26879583-26879584	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs183325363	chr9:26879618-26879619	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs534323272	chr9:26879676-26879677	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs541480455	chr9:26879720-26879721	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:184 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26834000-26882400	Weak transcription	HUVEC	blood vessel
3	chr9:26834200-26880200	Weak transcription	Lung	lung
4	chr9:26834200-26880200	Weak transcription	NHEK	skin
5	chr9:26834200-26882200	Weak transcription	HMEC	breast
6	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
8	chr9:26836400-26879600	Weak transcription	Esophagus	oesophagus
9	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
10	chr9:26838200-26879600	Weak transcription	Pancreas	Pancrea
11	chr9:26840600-26882400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:26840800-26879800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:26841200-26879800	Weak transcription	Colonic Mucosa	Colon
14	chr9:26842600-26882200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:26842800-26879600	Weak transcription	Thymus	Thymus
16	chr9:26846600-26881600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr9:26847000-26883000	Weak transcription	K562	blood
18	chr9:26851400-26888000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:26851800-26888600	Weak transcription	Fetal Heart	heart
20	chr9:26851800-26891600	Weak transcription	Stomach Mucosa	stomach
21	chr9:26852400-26888000	Weak transcription	NHLF	lung
22	chr9:26855000-26882200	Weak transcription	Right Ventricle	heart
23	chr9:26855400-26880200	Weak transcription	HepG2	liver
24	chr9:26855800-26888200	Weak transcription	NH-A	brain
25	chr9:26856000-26878800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:26856000-26881600	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:26856000-26882200	Weak transcription	Brain Anterior Caudate	brain
28	chr9:26856000-26882200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:26856200-26881400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:26856600-26888400	Weak transcription	Osteobl	bone
31	chr9:26857600-26891000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr9:26859400-26882200	Weak transcription	Small Intestine	intestine
33	chr9:26859600-26879200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr9:26859600-26881400	Weak transcription	HSMMtube	muscle
35	chr9:26859800-26880400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr9:26859800-26890000	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:26860200-26879000	Weak transcription	HSMM	muscle
38	chr9:26860200-26879600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr9:26861400-26880200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:26867000-26880200	Weak transcription	Gastric	stomach
41	chr9:26868400-26880200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:26868600-26879600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr9:26871000-26879600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:26871000-26879800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:26871200-26879600	Weak transcription	Fetal Thymus	thymus
46	chr9:26871200-26882200	Weak transcription	Hela-S3	cervix
47	chr9:26872400-26880800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr9:26872800-26879600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:26873400-26881400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:26875600-26882200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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