Variant report

Variant	nsv982855
Chromosome Location	chr10:89909945-89918540
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89621634..89623647-chr10:89910857..89914293,5	MCF-7	breast:
2	chr10:89912746..89913719-chr21:36180040..36181009,2	Hela-S3	cervix:
3	chr10:89912312..89912973-chr18:77249842..77250734,2	Hela-S3	cervix:
4	chr10:89912523..89913196-chr3:73160110..73160626,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTEN-8	chr10:89917585-89919220	NONHSAT015469
2	lnc-PTEN-8	chr10:89910034-89911669	FPKM1_group_3648_transcript_4

Variant related genes	Relation type
ENSG00000227268	chromatin interactions
ENSG00000171862	chromatin interactions
ENSG00000223247	chromatin interactions

Extended variants
information (count: 247 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:247 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184039181	chr10:89909987-89909988	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs531745464	chr10:89910050-89910051	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
3	rs549976996	chr10:89910123-89910124	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
4	rs77136370	chr10:89910181-89910182	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
5	rs201315250	chr10:89910186-89910187	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
6	rs112927378	chr10:89910187-89910188	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
7	rs532156620	chr10:89910212-89910213	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
8	rs376282021	chr10:89910257-89910258	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
9	rs547230652	chr10:89910345-89910346	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
10	rs146720670	chr10:89910378-89910379	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
11	rs568986997	chr10:89910420-89910421	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs536093815	chr10:89910424-89910425	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs148465817	chr10:89910493-89910494	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs142340761	chr10:89910615-89910616	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs116691547	chr10:89910616-89910617	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs558355176	chr10:89910639-89910640	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs113156147	chr10:89910651-89910652	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs7082474	chr10:89910661-89910662	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs186485714	chr10:89910705-89910706	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs370083540	chr10:89910736-89910737	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs75497992	chr10:89910769-89910770	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs574482937	chr10:89910770-89910771	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs12572780	chr10:89910840-89910841	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs554468952	chr10:89910869-89910870	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
25	rs151275004	chr10:89910876-89910877	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
26	rs547777324	chr10:89910923-89910924	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
27	rs140424746	chr10:89910974-89910975	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
28	rs543830767	chr10:89910986-89910987	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
29	rs191285026	chr10:89911022-89911023	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
30	rs372551854	chr10:89911086-89911087	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
31	rs565224666	chr10:89911105-89911106	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
32	rs147042036	chr10:89911149-89911150	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
33	rs184685315	chr10:89911191-89911192	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
34	rs559080421	chr10:89911307-89911308	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
35	rs563073905	chr10:89911332-89911333	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
36	rs529862772	chr10:89911393-89911394	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
37	rs147674908	chr10:89911422-89911423	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
38	rs142624299	chr10:89911520-89911521	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
39	rs565489813	chr10:89911522-89911523	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
40	rs189471747	chr10:89911569-89911570	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
41	rs7903749	chr10:89911570-89911571	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs192877913	chr10:89911597-89911598	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
43	rs185408139	chr10:89911625-89911626	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
44	rs553122099	chr10:89911668-89911669	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
45	rs566246394	chr10:89911699-89911700	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs536864109	chr10:89911745-89911746	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs554945527	chr10:89911746-89911747	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs138891800	chr10:89911766-89911767	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs533087227	chr10:89911771-89911772	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs543449735	chr10:89911812-89911813	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	21569311	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Lung adenocarcinoma	17982442	CNVD

Chromatin state (count:230 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89905600-89910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:89907000-89912400	Weak transcription	Small Intestine	intestine
3	chr10:89908400-89917200	Weak transcription	Adipose Nuclei	Adipose
4	chr10:89909200-89911200	Enhancers	Osteobl	bone
5	chr10:89909200-89918600	Enhancers	Hela-S3	cervix
6	chr10:89909200-89919200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:89909200-89919200	Enhancers	NHDF-Ad	bronchial
8	chr10:89909400-89910200	Enhancers	HSMMtube	muscle
9	chr10:89909400-89910600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:89909400-89911000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:89909400-89913600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:89909400-89913600	Enhancers	HMEC	breast
13	chr10:89909400-89916200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:89909400-89919200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:89909600-89910000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:89909600-89910400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:89909600-89910400	Enhancers	NHLF	lung
18	chr10:89909600-89910600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:89909600-89910600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:89909600-89910600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:89909600-89910600	Enhancers	NHEK	skin
22	chr10:89909800-89910200	Enhancers	HSMM	muscle
23	chr10:89909800-89910400	Flanking Active TSS	A549	lung
24	chr10:89909800-89910400	Enhancers	NH-A	brain
25	chr10:89909800-89910600	Enhancers	HUVEC	blood vessel
26	chr10:89909800-89911800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:89909800-89912200	Weak transcription	Right Atrium	heart
28	chr10:89909800-89912200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:89910000-89912000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:89910200-89910400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr10:89910200-89912000	Weak transcription	HSMM	muscle
32	chr10:89910200-89917400	Weak transcription	HSMMtube	muscle
33	chr10:89910400-89911000	Enhancers	A549	lung
34	chr10:89910400-89911800	Weak transcription	NHLF	lung
35	chr10:89910400-89912000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:89910400-89912400	Weak transcription	NH-A	brain
37	chr10:89910600-89911600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:89910600-89911600	Weak transcription	NHEK	skin
39	chr10:89910600-89911800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:89910600-89912000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:89910600-89912000	Weak transcription	HUVEC	blood vessel
42	chr10:89910600-89912200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:89910800-89911600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:89911000-89911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:89911000-89912200	Weak transcription	A549	lung
46	chr10:89911200-89911600	Weak transcription	Osteobl	bone
47	chr10:89911400-89913200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:89911600-89912200	ZNF genes & repeats	GM12878-XiMat	blood
49	chr10:89911600-89913200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:89911600-89913400	Enhancers	Osteobl	bone

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