Variant report

Variant	rs185408139
Chromosome Location	chr10:89911625-89911626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89621634..89623647-chr10:89910857..89914293,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTEN-8	chr10:89910034-89911669	FPKM1_group_3648_transcript_4

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv982855	chr10:89909945-89918540	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89907000-89912400	Weak transcription	Small Intestine	intestine
2	chr10:89908400-89917200	Weak transcription	Adipose Nuclei	Adipose
3	chr10:89909200-89918600	Enhancers	Hela-S3	cervix
4	chr10:89909200-89919200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:89909200-89919200	Enhancers	NHDF-Ad	bronchial
6	chr10:89909400-89913600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:89909400-89913600	Enhancers	HMEC	breast
8	chr10:89909400-89916200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:89909400-89919200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:89909800-89911800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:89909800-89912200	Weak transcription	Right Atrium	heart
12	chr10:89909800-89912200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:89910000-89912000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:89910200-89912000	Weak transcription	HSMM	muscle
15	chr10:89910200-89917400	Weak transcription	HSMMtube	muscle
16	chr10:89910400-89911800	Weak transcription	NHLF	lung
17	chr10:89910400-89912000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:89910400-89912400	Weak transcription	NH-A	brain
19	chr10:89910600-89911800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:89910600-89912000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:89910600-89912000	Weak transcription	HUVEC	blood vessel
22	chr10:89910600-89912200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:89911000-89912200	Weak transcription	A549	lung
24	chr10:89911400-89913200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:89911600-89912200	ZNF genes & repeats	GM12878-XiMat	blood
26	chr10:89911600-89913200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:89911600-89913400	Enhancers	Osteobl	bone
28	chr10:89911600-89913600	Enhancers	NHEK	skin
29	chr10:89911600-89914000	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links