Variant report

Variant	nsv982865
Chromosome Location	chr10:116879604-116886328
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 224 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:224 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542655983	chr10:116879614-116879615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs561424388	chr10:116879687-116879688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551423131	chr10:116879707-116879708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs566739985	chr10:116879712-116879713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs527533140	chr10:116879735-116879736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs543900591	chr10:116879753-116879754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75657201	chr10:116879862-116879863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185127269	chr10:116879887-116879888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189836666	chr10:116879900-116879901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs566008697	chr10:116879915-116879916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs372047861	chr10:116879942-116879943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375184501	chr10:116880021-116880022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs552060794	chr10:116880068-116880069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs145314647	chr10:116880085-116880086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs548251650	chr10:116880107-116880108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs569645275	chr10:116880147-116880148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183138237	chr10:116880166-116880167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs377094111	chr10:116880213-116880214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548724650	chr10:116880252-116880253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs114742716	chr10:116880310-116880311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs538872463	chr10:116880316-116880317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs114996669	chr10:116880443-116880444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs572445752	chr10:116880473-116880474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs4752667	chr10:116880481-116880482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs186424428	chr10:116880529-116880530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs536556793	chr10:116880550-116880551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554619066	chr10:116880561-116880562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576403933	chr10:116880611-116880612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs75795121	chr10:116880665-116880666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs537517425	chr10:116880684-116880685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs373642266	chr10:116880813-116880814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs146460658	chr10:116880852-116880853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs72300402	chr10:116880889-116880890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs35660681	chr10:116880894-116880895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs1264779	chr10:116880909-116880910	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs559680139	chr10:116880940-116880941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs191669829	chr10:116880952-116880953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs11197070	chr10:116881021-116881022	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs563110936	chr10:116881044-116881045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs111971975	chr10:116881086-116881087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs11197071	chr10:116881109-116881110	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs538604930	chr10:116881142-116881143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs533671826	chr10:116881156-116881157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs183535570	chr10:116881175-116881176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs547545399	chr10:116881213-116881214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs149430271	chr10:116881219-116881220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs536518893	chr10:116881222-116881223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs554214418	chr10:116881261-116881262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs555258646	chr10:116881333-116881334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576344255	chr10:116881345-116881346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116866000-116885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:116877200-116882200	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:116878800-116884000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:116883400-116883600	Enhancers	Ovary	ovary
5	chr10:116884000-116884600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:116884000-116885600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:116884200-116884600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:116885000-116886000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:116885200-116885800	Enhancers	Pancreatic Islets	Pancreatic Islet

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