Variant report

Variant	rs1264779
Chromosome Location	chr10:116880909-116880910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12266550	1.00[EUR][1000 genomes]
rs1264760	1.00[EUR][1000 genomes]
rs1264766	1.00[EUR][1000 genomes]
rs1264777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1264790	1.00[EUR][1000 genomes]
rs1264792	1.00[EUR][1000 genomes]
rs1264800	1.00[EUR][1000 genomes]
rs1264804	1.00[EUR][1000 genomes]
rs1268462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1268917	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1314595	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1389645	1.00[EUR][1000 genomes]
rs4391748	1.00[EUR][1000 genomes]
rs6585324	1.00[EUR][1000 genomes]
rs6585325	1.00[EUR][1000 genomes]
rs6585326	1.00[EUR][1000 genomes]
rs7071026	1.00[EUR][1000 genomes]
rs7081737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089161	1.00[EUR][1000 genomes]
rs7096083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100002	1.00[EUR][1000 genomes]
rs73368776	1.00[EUR][1000 genomes]
rs73370603	1.00[EUR][1000 genomes]
rs73370613	1.00[EUR][1000 genomes]
rs765492	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7896862	1.00[EUR][1000 genomes]
rs7899872	1.00[EUR][1000 genomes]
rs7908792	1.00[EUR][1000 genomes]
rs7921195	1.00[EUR][1000 genomes]
rs7921716	1.00[EUR][1000 genomes]
rs7921864	1.00[EUR][1000 genomes]
rs7923284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1043242	chr10:116655057-116883386	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv982865	chr10:116879604-116886328	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116866000-116885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:116877200-116882200	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:116878800-116884000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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