Variant report
| Variant | rs12266550 |
|---|---|
| Chromosome Location | chr10:117013253-117013254 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs1264760 | 1.00[EUR][1000 genomes] |
| rs1264766 | 1.00[EUR][1000 genomes] |
| rs1264777 | 1.00[EUR][1000 genomes] |
| rs1264779 | 1.00[EUR][1000 genomes] |
| rs1264790 | 1.00[EUR][1000 genomes] |
| rs1264792 | 1.00[EUR][1000 genomes] |
| rs1264800 | 1.00[EUR][1000 genomes] |
| rs1264804 | 1.00[EUR][1000 genomes] |
| rs1268462 | 1.00[EUR][1000 genomes] |
| rs1268917 | 1.00[EUR][1000 genomes] |
| rs1314595 | 1.00[EUR][1000 genomes] |
| rs1389645 | 1.00[EUR][1000 genomes] |
| rs1494171 | 1.00[EUR][1000 genomes] |
| rs4391748 | 1.00[EUR][1000 genomes] |
| rs57996160 | 1.00[EUR][1000 genomes] |
| rs585348 | 1.00[EUR][1000 genomes] |
| rs596330 | 1.00[EUR][1000 genomes] |
| rs597657 | 1.00[EUR][1000 genomes] |
| rs606534 | 1.00[EUR][1000 genomes] |
| rs60858345 | 1.00[EUR][1000 genomes] |
| rs612233 | 1.00[EUR][1000 genomes] |
| rs6585324 | 1.00[EUR][1000 genomes] |
| rs6585325 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6585326 | 1.00[EUR][1000 genomes] |
| rs675780 | 1.00[EUR][1000 genomes] |
| rs7071026 | 1.00[EUR][1000 genomes] |
| rs7081737 | 1.00[EUR][1000 genomes] |
| rs7086259 | 1.00[EUR][1000 genomes] |
| rs7089161 | 1.00[EUR][1000 genomes] |
| rs7096083 | 1.00[EUR][1000 genomes] |
| rs7100002 | 1.00[EUR][1000 genomes] |
| rs73365481 | 1.00[EUR][1000 genomes] |
| rs765492 | 1.00[EUR][1000 genomes] |
| rs7896862 | 1.00[EUR][1000 genomes] |
| rs7908792 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7921195 | 1.00[EUR][1000 genomes] |
| rs7921716 | 1.00[EUR][1000 genomes] |
| rs7923284 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869279 | chr10:116884639-117032437 | Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv868940 | chr10:116933802-117032437 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:116997200-117049800 | Weak transcription | Ovary | ovary |
| 2 | chr10:117011000-117015400 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 3 | chr10:117011400-117034400 | Weak transcription | Aorta | Aorta |
