Variant report
| Variant | rs1314595 |
|---|---|
| Chromosome Location | chr10:116908479-116908480 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12266550 | 1.00[EUR][1000 genomes] |
| rs1264760 | 1.00[EUR][1000 genomes] |
| rs1264766 | 1.00[EUR][1000 genomes] |
| rs1264777 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1264779 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1264790 | 1.00[EUR][1000 genomes] |
| rs1264792 | 1.00[EUR][1000 genomes] |
| rs1264800 | 1.00[EUR][1000 genomes] |
| rs1264804 | 1.00[EUR][1000 genomes] |
| rs1268462 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1268917 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1389645 | 1.00[EUR][1000 genomes] |
| rs4391748 | 1.00[EUR][1000 genomes] |
| rs6585324 | 1.00[EUR][1000 genomes] |
| rs6585325 | 1.00[EUR][1000 genomes] |
| rs6585326 | 1.00[EUR][1000 genomes] |
| rs7071026 | 1.00[EUR][1000 genomes] |
| rs7081737 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7086259 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7089161 | 1.00[EUR][1000 genomes] |
| rs7096083 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7100002 | 1.00[EUR][1000 genomes] |
| rs765492 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7896862 | 1.00[EUR][1000 genomes] |
| rs7908792 | 1.00[EUR][1000 genomes] |
| rs7921195 | 1.00[EUR][1000 genomes] |
| rs7921716 | 1.00[EUR][1000 genomes] |
| rs7923284 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3435429 | chr10:116394152-117006347 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv831998 | chr10:116847998-116969618 | Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv869279 | chr10:116884639-117032437 | Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:116895600-116909200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
