Variant report

Variant	nsv983762
Chromosome Location	chr13:88726553-88757094
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-15	chr13:88729922-88730495	NONHSAT034607

Extended variants
information (count: 254 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:254 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554989902	chr13:88726557-88726558	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs536899387	chr13:88726571-88726572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs572791923	chr13:88726575-88726576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs540268752	chr13:88726608-88726609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558642515	chr13:88726677-88726678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs555544363	chr13:88726715-88726716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs573470221	chr13:88726717-88726718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs188879208	chr13:88726746-88726747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544394449	chr13:88726749-88726750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs570458764	chr13:88726750-88726751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs562691451	chr13:88726795-88726796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs75298644	chr13:88726866-88726867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs542086734	chr13:88726887-88726888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs565492174	chr13:88726901-88726902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs557920250	chr13:88726966-88726967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs367764067	chr13:88726986-88726987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs140667984	chr13:88727013-88727014	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs546598884	chr13:88727026-88727027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539467176	chr13:88727028-88727029	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs571380023	chr13:88727045-88727046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs532485780	chr13:88727079-88727080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs144460776	chr13:88727080-88727081	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs577788254	chr13:88727083-88727084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs577254237	chr13:88727106-88727107	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs544981452	chr13:88727142-88727143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs73578179	chr13:88727195-88727196	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs192968924	chr13:88727197-88727198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs184641610	chr13:88727211-88727212	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs567059038	chr13:88727271-88727272	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs145434639	chr13:88727273-88727274	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs558609959	chr13:88727340-88727341	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs576980719	chr13:88727410-88727411	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs189521890	chr13:88727459-88727460	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs556014852	chr13:88727460-88727461	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs574573389	chr13:88727464-88727465	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs116960584	chr13:88727468-88727469	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs560354929	chr13:88727475-88727476	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs148821977	chr13:88727507-88727508	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs562328052	chr13:88727564-88727565	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs564920234	chr13:88727565-88727566	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs7326338	chr13:88727590-88727591	Flanking Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs72643089	chr13:88727592-88727593	Flanking Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs566167130	chr13:88727593-88727594	Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs530270012	chr13:88727607-88727608	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs34937844	chr13:88727635-88727636	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs6491851	chr13:88727646-88727647	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs112446072	chr13:88727669-88727670	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs534516085	chr13:88727686-88727687	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs115213437	chr13:88727687-88727688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs570442550	chr13:88727707-88727708	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Non-small cell lung cancer	16651412	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88726200-88726600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:88726600-88727000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:88727000-88727200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:88727200-88727600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:88727200-88727600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:88727200-88727600	Enhancers	Adipose Nuclei	Adipose
7	chr13:88727200-88727600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr13:88727400-88727800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr13:88727600-88728000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:88737400-88737600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:88737400-88737800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:88737800-88738800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:88737800-88738800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:88738200-88739400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr13:88738800-88739200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:88738800-88739200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:88749800-88750400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:88755200-88756600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:88755800-88756000	Enhancers	Aorta	Aorta
20	chr13:88755800-88756800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr13:88756200-88757000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr13:88756800-88758600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:88757000-88761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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