Variant report

Variant	rs7326338
Chromosome Location	chr13:88727590-88727591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1333799	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1333800	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1333802	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1333806	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1556569	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1819515	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855385	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4238236	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6491834	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139799	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7338756	0.97[EUR][1000 genomes]
rs7996843	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9300947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9519264	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9558270	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969962	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs970474	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970702	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs993261	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900793	chr13:88711960-88871759	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv983762	chr13:88726553-88757094	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88727200-88727600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:88727200-88727600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:88727200-88727600	Enhancers	Adipose Nuclei	Adipose
4	chr13:88727200-88727600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr13:88727400-88727800	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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