Variant report

Variant	rs10000976
Chromosome Location	chr4:84978944-84978945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84969530..84971109-chr4:84977042..84979357,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10003808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10516709	0.80[AMR][1000 genomes]
rs11099635	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648456	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12649011	0.80[AMR][1000 genomes]
rs12651174	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1317011	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17008059	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1882385	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1882388	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1882389	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1921861	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2003082	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2868869	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2868871	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2868874	0.83[AMR][1000 genomes]
rs62301631	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62301632	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62301635	0.83[AMR][1000 genomes]
rs6820270	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613139	0.83[AMR][1000 genomes]
rs72613140	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84973600-84979000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:84973800-84979000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:84973800-84979200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:84973800-84979200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:84973800-84979200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:84973800-84979200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:84973800-84979200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:84973800-84979200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:84973800-84980200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:84978000-84979000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:84978600-84979800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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