Variant report
| Variant | rs72613140 |
|---|---|
| Chromosome Location | chr4:85032782-85032783 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10000976 | 0.82[AMR][1000 genomes] |
| rs10003808 | 0.82[AMR][1000 genomes] |
| rs10516709 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11099635 | 0.83[AMR][1000 genomes] |
| rs12643400 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12644347 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12648456 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12649011 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12651174 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1317011 | 0.86[AMR][1000 genomes] |
| rs17008059 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs17008168 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1882385 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1882388 | 0.83[AMR][1000 genomes] |
| rs1882389 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1921861 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2003082 | 0.83[AMR][1000 genomes] |
| rs2868869 | 0.87[AMR][1000 genomes] |
| rs2868871 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2868874 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs5017999 | 0.83[EUR][1000 genomes] |
| rs62301631 | 0.89[AMR][1000 genomes] |
| rs62301632 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs62301635 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6820270 | 0.80[AMR][1000 genomes] |
| rs72613139 | 0.99[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879512 | chr4:84374692-85090749 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv916422 | chr4:84965304-85145657 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv524354 | chr4:85006975-85215142 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv829996 | chr4:85016673-85173300 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv980457 | chr4:85027407-85041791 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:85030200-85032800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
