Variant report

Variant	rs17008168
Chromosome Location	chr4:85057124-85057125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10516709	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11099635	0.80[AMR][1000 genomes]
rs12643400	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12644347	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12648456	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12649011	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12651174	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1317011	0.84[AMR][1000 genomes]
rs17008059	0.87[AMR][1000 genomes]
rs1882385	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1882388	0.80[AMR][1000 genomes]
rs1882389	0.87[AMR][1000 genomes]
rs1921861	0.86[AMR][1000 genomes]
rs1997478	0.83[CHB][hapmap]
rs2003082	0.80[AMR][1000 genomes]
rs2178604	0.83[CHB][hapmap]
rs2868869	0.83[AMR][1000 genomes]
rs2868871	0.86[AMR][1000 genomes]
rs2868874	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2868875	0.83[CHB][hapmap]
rs5017999	0.81[EUR][1000 genomes]
rs62301631	0.86[AMR][1000 genomes]
rs62301632	0.87[AMR][1000 genomes]
rs62301635	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72613139	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72613140	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv508294	chr4:85035979-85073816	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv18264	chr4:85053987-85057210	Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv2760872	chr4:85054481-85066641	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17008168	SPP1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85057000-85057600	Active TSS	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links