Variant report

Variant	rs10001238
Chromosome Location	chr4:150024183-150024184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10002382	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10008213	1.00[AMR][1000 genomes]
rs10020031	1.00[AMR][1000 genomes]
rs10021342	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022699	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024845	0.93[AFR][1000 genomes]
rs10028420	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029920	1.00[AFR][1000 genomes]
rs10030923	1.00[AMR][1000 genomes]
rs10034293	1.00[AMR][1000 genomes]
rs10035071	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471066	1.00[AMR][1000 genomes]
rs10471067	1.00[AMR][1000 genomes]
rs28380503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28474774	1.00[AMR][1000 genomes]
rs28507209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547154	1.00[AMR][1000 genomes]
rs28556844	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565297	1.00[AMR][1000 genomes]
rs28578645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28597972	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599473	1.00[AMR][1000 genomes]
rs28599735	0.94[AFR][1000 genomes]
rs28611497	1.00[AMR][1000 genomes]
rs28682907	1.00[AMR][1000 genomes]
rs28690552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28691729	1.00[AMR][1000 genomes]
rs28749928	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28753681	1.00[AMR][1000 genomes]
rs6834249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857868	1.00[AMR][1000 genomes]
rs73857869	1.00[AMR][1000 genomes]
rs9992862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994392	1.00[AMR][1000 genomes]
rs9997937	1.00[AMR][1000 genomes]
rs9999957	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4544	chr4:149979800-150026323	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150023800-150025200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:150023800-150026600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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