Variant report

Variant	rs28682907
Chromosome Location	chr4:150089820-150089821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10001238	1.00[AMR][1000 genomes]
rs10002382	1.00[AMR][1000 genomes]
rs10008213	1.00[AMR][1000 genomes]
rs10020031	1.00[AMR][1000 genomes]
rs10021342	1.00[AMR][1000 genomes]
rs10022699	1.00[AMR][1000 genomes]
rs10024710	1.00[AMR][1000 genomes]
rs10028420	1.00[AMR][1000 genomes]
rs10028781	1.00[AMR][1000 genomes]
rs10030923	1.00[AMR][1000 genomes]
rs10034293	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10035071	1.00[AMR][1000 genomes]
rs10471066	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471067	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28380503	1.00[AMR][1000 genomes]
rs28474774	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28507209	1.00[AMR][1000 genomes]
rs28547154	1.00[AMR][1000 genomes]
rs28556844	1.00[AMR][1000 genomes]
rs28565297	1.00[AMR][1000 genomes]
rs28578645	1.00[AMR][1000 genomes]
rs28597972	1.00[AMR][1000 genomes]
rs28599473	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28611497	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690552	1.00[AMR][1000 genomes]
rs28691729	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28749928	1.00[AMR][1000 genomes]
rs28753681	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6834249	1.00[AMR][1000 genomes]
rs73857868	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992862	1.00[AMR][1000 genomes]
rs9994392	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997937	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999957	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880247	chr4:150057979-150159936	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1022438	chr4:150066349-150196711	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv595687	chr4:150070596-150178533	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150083400-150092200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:150089800-150090400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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